Browse Element(s) Details


Os.57516.1.A1_at

Description gb:AF358773.1
DB_XREF= gi:19070772
TID=Os.57516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57516 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl265 NADH-ubiquinine oxido-reductase 24kD subunit mRNA, partial cds
DEF=Oryza sativa clone Osl265 NADH-ubiquinine oxido-reductase 24kD subunit mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g100301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10000OsAffx.30366.1.S1_at11/1110+5193506..5193820hypothetical protein
LOC_Os10g10010OsAffx.30367.1.S1_at11/1110+5195388..5195729hypothetical protein
LOC_Os10g10020OsAffx.8423.1.S1_at9/1110+5201878..5203860hypothetical protein
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57516.1.A1_at--211--3811NONE
CTGCCTTTGGGCTAAATCCAGGACT
NONE
Os.57516.1.A1_at--712--1591NONE
AGCTGCTGCTTTATGGCCTTCTGGA
NONE
Os.57516.1.A1_at--694--851NONE
ATGGCCTTCTGGATAGTTTTTTACA
NONE
Os.57516.1.A1_at--627--6811NONE
GTTTTTTACAATTGCCTCTATCCTC
NONE
Os.57516.1.A1_at--1073--4451Chr10:5210033..5210305 (25 bp)
GCCTCTATCCTCTTATAGTTTTCTG
LOC_Os10g10030
Os.57516.1.A1_at--806--1191NONE
AGTATCAGGGTTATTCTCAGGAGTA
NONE
Os.57516.1.A1_at--577--3751NONE
CTCAGGAGTATCTCTGTGCACAAAT
NONE
Os.57516.1.A1_at--223--7351NONE
GTGCACAAATAAAGCTCCTCCAGCT
NONE
Os.57516.1.A1_at--226--4791NONE
GCTCCATTTTGCATAGCTGTCTTAT
NONE
Os.57516.1.A1_at--1080--651NONE
ATGCAAATTCCTTACATGTCTTCCC
NONE
Os.57516.1.A1_at--895--2091NONE
ACATGTCTTCCCCAGTGGGCGGTGA
NONE
Target Sequence 
CTGCCTTTGGGCTAAATCCAGGACTGGAAGAACAGCTGCTGCTTTATGGCCTTCTGGATAGTTTTTTACAATTGCCTCTA
TCCTCTTATAGTTTTCTGGTGTGAAATCAAATGGAGTATCAGGGTTATTCTCAGGAGTATCTCTGTGCACAAATAAAGCT
CCTCCAGCTCCATTTTGCATAGCTGTCTTATGCAAATTCCTTACATGTCTTCCCCAGTGGGCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57516.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis