Browse Element(s) Details


OsAffx.30368.1.S1_at

Description tigr:9638.m00876
TID=OsAffx.30368.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1003011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10000OsAffx.30366.1.S1_at11/1110+5193506..5193820hypothetical protein
LOC_Os10g10010OsAffx.30367.1.S1_at11/1110+5195388..5195729hypothetical protein
LOC_Os10g10020OsAffx.8423.1.S1_at9/1110+5201878..5203860hypothetical protein
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30368.1.S1_at--824--10571Chr10:5208760..5208784 (25 bp)
TTCGGAGATTAAGACCAGACCAATT
LOC_Os10g10030
OsAffx.30368.1.S1_at--575--10031Chr10:5208734..5208758 (25 bp)
TAGATTTGGTAGATCCTCCGGTTCT
LOC_Os10g10030
OsAffx.30368.1.S1_at--809--10211Chr10:5208688..5208712 (25 bp)
TATTAGACAAGTTGCCTCCCTTGCT
LOC_Os10g10030
OsAffx.30368.1.S1_at--148--1351Chr10:5208613..5208637 (25 bp)
AGAGATAACACTGCAGCTTTTACGA
LOC_Os10g10030
OsAffx.30368.1.S1_at--837--1291Chr10:5208581..5208605 (25 bp)
AGATGACCCCATCACATGTTAGTCC
LOC_Os10g10030
OsAffx.30368.1.S1_at--717--5231Chr10:5208537..5208561 (25 bp)
GAATCACTACTGACTCAAGGAGCCA
LOC_Os10g10030
OsAffx.30368.1.S1_at--566--8071Chr10:5208519..5208543 (25 bp)
GGAGCCATTGACCAAGTGATTCATG
LOC_Os10g10030
OsAffx.30368.1.S1_at--418--2991Chr10:5208471..5208495 (25 bp)
AATGTAGCATCTCAACGCTCTCAAA
LOC_Os10g10030
OsAffx.30368.1.S1_at--523--3771Chr10:5208454..5208478 (25 bp)
CTCTCAAACCTCATGCTATAGCTTG
LOC_Os10g10030
OsAffx.30368.1.S1_at--201--1431Chr10:5208392..5208416 (25 bp)
AGAAGTGTTTATCCTTTGTCCCTTG
LOC_Os10g10030
OsAffx.30368.1.S1_at--1148--10811Chr10:5208370..5208394 (25 bp)
TTGTGTTTGGCGTTCTTTGTACTTA
LOC_Os10g10030
Target Sequence 
TTCGGAGATTAAGACCAGACCAATTATAGATTTGGTAGATCCTCCGGTTCTTGACAAGGCAAATGAAGAAGATATTAGAC
AAGTTGCCTCCCTTGCTGAGATGTGCATAAAGCTAAAAGGTGAAGAAAGGCCTACAATGAGGCAAGTAGAGATAACACTG
CAGCTTTTACGAACAGAAAAGATGACCCCATCACATGTTAGTCCAGACAGAAACCAAGAGATAGAATCACTACTGACTCA
AGGAGCCATTGACCAAGTGATTCATGCTTTAGTAAATGTTGACAGAGCTAATGTAGCATCTCAACGCTCTCAAACCTCAT
GCTATAGCTTGGAGAAAGAATTCTTGTCATCTGCTAGCCTACCACGGTAGAAGTGTTTATCCTTTGTCCCTTGTGTTTGG
CGTTCTTTGTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis