Browse Element(s) Details


OsAffx.30366.1.S1_at

Description tigr:9638.m00873
TID=OsAffx.30366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09970Os.23638.1.A1_x_at1/1110+5171140..5176142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09990Os.14935.1.S1_at11/1110+5178642..5180368Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os10g10000OsAffx.30366.1.S1_at11/1110+5193506..5193820hypothetical protein
LOC_Os10g10010OsAffx.30367.1.S1_at11/1110+5195388..5195729hypothetical protein
LOC_Os10g10020OsAffx.8423.1.S1_at9/1110+5201878..5203860hypothetical protein
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30366.1.S1_at--165--2171Chr10:5193536..5193560 (25 bp)
ACACTGCTGCCTGCTAGGTCCTACT
LOC_Os10g10000
OsAffx.30366.1.S1_at--746--5851Chr10:5193601..5193625 (25 bp)
GACCACCGCTGAGCTACTGGATTTG
LOC_Os10g10000
OsAffx.30366.1.S1_at--954--1791Chr10:5193605..5193629 (25 bp)
ACCGCTGAGCTACTGGATTTGTGTG
LOC_Os10g10000
OsAffx.30366.1.S1_at--776--211Chr10:5193621..5193645 (25 bp)
ATTTGTGTGGCTGTCGCGTTTTCTC
LOC_Os10g10000
OsAffx.30366.1.S1_at--780--7531Chr10:5193627..5193651 (25 bp)
GTGGCTGTCGCGTTTTCTCGTCGAT
LOC_Os10g10000
OsAffx.30366.1.S1_at--1131--9331Chr10:5193634..5193658 (25 bp)
TCGCGTTTTCTCGTCGATCCGGGAG
LOC_Os10g10000
OsAffx.30366.1.S1_at--759--10351Chr10:5193639..5193663 (25 bp)
TTTTCTCGTCGATCCGGGAGGTGGC
LOC_Os10g10000
OsAffx.30366.1.S1_at--242--7831Chr10:5193667..5193691 (25 bp)
GGTAATGACCAGGTTGAGCTCTGCA
LOC_Os10g10000
OsAffx.30366.1.S1_at--1094--9311Chr10:5193725..5193749 (25 bp)
TCCCTTTGGACCGACAGCGATGAGA
LOC_Os10g10000
OsAffx.30366.1.S1_at--507--971Chr10:5193749..5193773 (25 bp)
AGGAGCCATCTCATCGTCGGCTGCA
LOC_Os10g10000
OsAffx.30366.1.S1_at--490--7191Chr10:5193764..5193788 (25 bp)
GTCGGCTGCAACGGCGATTTGATGA
LOC_Os10g10000
Target Sequence 
ACACTGCTGCCTGCTAGGTCCTACTCCTCCTGTTGCCGGCCCCAACCATGCCCTCCCATGGCGGAGACCACCGCTGAGCT
ACTGGATTTGTGTGGCTGTCGCGTTTTCTCGTCGATCCGGGAGGTGGCGTTGGTAATGACCAGGTTGAGCTCTGCAAATC
TCGACAAGGGGAGCGAGGTCTCCATCTCCTCCCTTTGGACCGACAGCGATGAGAGGAGCCATCTCATCGTCGGCTGCAAC
GGCGATTTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis