Browse Element(s) Details


OsAffx.8423.1.S1_at

Description tigr:9638.m00875
TID=OsAffx.8423.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g100209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09990Os.14935.1.S1_at11/1110+5178642..5180368Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os10g10000OsAffx.30366.1.S1_at11/1110+5193506..5193820hypothetical protein
LOC_Os10g10010OsAffx.30367.1.S1_at11/1110+5195388..5195729hypothetical protein
LOC_Os10g10020OsAffx.8423.1.S1_at9/1110+5201878..5203860hypothetical protein
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8423.1.S1_at--736--6671Chr10:5202246..5202270 (25 bp)
GTTGCTCTCGGCAACTTCTGAGAGA
LOC_Os10g10020
OsAffx.8423.1.S1_at--379--6171NONE
GAGGAGTACGACAGTGCTTCAAGCA
NONE
OsAffx.8423.1.S1_at--523--2611Chr10:5203484..5203508 (25 bp)
AACCCTCGAGCACTAACCTATGTGG
LOC_Os10g10020
OsAffx.8423.1.S1_at--792--4871Chr10:5203527..5203551 (25 bp)
GCTTAGGGTCAACAGGAGGTACACA
LOC_Os10g10020
OsAffx.8423.1.S1_at--352--9691NONE
TCACACCCCTGAAATCTCTTATGTA
NONE
OsAffx.8423.1.S1_at--1136--8731Chr10:5203662..5203686 (25 bp)
TGTAGCAAACCGGTTCGACAACACA
LOC_Os10g10020
OsAffx.8423.1.S1_at--569--5311Chr10:5203695..5203719 (25 bp)
GAAGGTATGCGCTGACATTTGCCAC
LOC_Os10g10020
OsAffx.8423.1.S1_at--1017--2071Chr10:5203709..5203733 (25 bp)
ACATTTGCCACTTTATCCGCTGTGA
LOC_Os10g10020
OsAffx.8423.1.S1_at--31--10151Chr10:5203722..5203746 (25 bp)
TATCCGCTGTGATTGCTGCAACGCA
LOC_Os10g10020
OsAffx.8423.1.S1_at--11--1851Chr10:5203742..5203766 (25 bp)
ACGCACTAGGGCAATCTTACGACAA
LOC_Os10g10020
OsAffx.8423.1.S1_at--615--5351Chr10:5203786..5203810 (25 bp)
GAAGATAAATTCAAGCCCCTAAGAG
LOC_Os10g10020
Target Sequence 
GTTGCTCTCGGCAACTTCTGAGAGAGAGAGAGAGAAGAGGGGAGAGAGAAGAGAGAGAGGAAGAGGGGGAAGAGGAGTAC
GACAGTGCTTCAAGCAACCCTCGAGCACTAACCTATGTGGGTATTACATGTTGGAGATGCTTAGGGTCAACAGGAGGTAC
ACAACAAACATCAATCACACCCCTGAAATCTCTTATGTAGCAAACCGGTTCGACAACACAACAATTATGAAGGTATGCGC
TGACATTTGCCACTTTATCCGCTGTGATTGCTGCAACGCACTAGGGCAATCTTACGACAATGAGAGTCAGCTGGCATTAG
AAGATAAATTCAAGCCCCTAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis