Browse Element(s) Details


OsAffx.20725.5.S1_at

Description tigr:9631.m04019
TID=OsAffx.20725.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4180011/11transposon protein, putative, unclassified
LOC_Os10g068901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41750NANA3+23143844..23145073transposon protein, putative, unclassified
LOC_Os03g41770NANA3+23147133..23153035retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780Os.52323.1.S1_at2/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780OsAffx.15645.1.S1_at1/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780OsAffx.10528.1.S1_x_at1/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41790Os.47004.1.S1_at2/113+23162642..23164889retrotransposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.5.S1_at11/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.1.S1_x_at2/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.3.S1_at2/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.3.S1_x_at1/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.1.S1_at1/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41810OsAffx.18934.1.S1_x_at11/113+23173389..23173820hypothetical protein
LOC_Os03g41810OsAffx.15703.1.S1_x_at2/113+23173389..23173820hypothetical protein
LOC_Os03g41820OsAffx.25475.1.S1_at11/113+23176134..23176535hypothetical protein
LOC_Os03g41830OsAffx.5954.5.S1_x_at2/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41830OsAffx.29791.1.S1_at1/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41840OsAffx.5954.3.S1_x_at3/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41840OsAffx.5954.2.S1_at1/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41850NANA3+23193880..23195016hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20725.5.S1_at--1106--9531Chr03:23171357..23171784 (25 bp)
TCTTTGGTTCCGCAGAAGCAATTCA
LOC_Os03g41800
OsAffx.20725.5.S1_at--223--5551Chr03:23172059..23172083 (25 bp)
GAAAGCGAAGAGCAACGTGCCCTTT
LOC_Os03g41800
OsAffx.20725.5.S1_at--583--3932Chr10:3572600..3572620 (21 bp)
CGTGCCCTTTGATAGGCGGGATCGA
LOC_Os10g06890
OsAffx.20725.5.S1_at--848--4651Chr03:23172089..23172113 (25 bp)
GCGGGATCGAGAGACAACTAGACCA
LOC_Os03g41800
OsAffx.20725.5.S1_at--313--10751Chr03:23172202..23172226 (25 bp)
TTGACAGGGCTATGGCTGTTCTGAA
LOC_Os03g41800
OsAffx.20725.5.S1_at--100--8771Chr03:23172218..23172242 (25 bp)
TGTTCTGAAGGGATTGCGTAGTCAA
LOC_Os03g41800
OsAffx.20725.5.S1_at--833--971Chr03:23172247..23172271 (25 bp)
AGGAGATACCGCGTGACTCTACTGC
LOC_Os03g41800
OsAffx.20725.5.S1_at--586--1991Chr03:23172262..23172286 (25 bp)
ACTCTACTGCGACTGTTGACACCAA
LOC_Os03g41800
OsAffx.20725.5.S1_at--924--6631Chr03:23172276..23172300 (25 bp)
GTTGACACCAATACGCAAGATGGCA
LOC_Os03g41800
OsAffx.20725.5.S1_at--937--1311Chr03:23172293..23172317 (25 bp)
AGATGGCATTGCTGGACGAGTTCAA
LOC_Os03g41800
OsAffx.20725.5.S1_at--1144--4611Chr03:23172303..23172327 (25 bp)
GCTGGACGAGTTCAAAACGCCGAAA
LOC_Os03g41800
Target Sequence 
TCTTTGGTTCCGCAGAAGCAATTCAAGGTTATTGCAGATGTCGATGAAGGGGTATTTACATGCAAGTGCAAACAGTGGGA
GCATACAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAAGTTGAGAAGATACCCGCTGTCTACATCC
TAAAGAGGTACACAATGAAAGCGAAGAGCAACGTGCCCTTTGATAGGCGGGATCGAGAGACAACTAGACCAGATGGGGTT
CAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTTGCTAGGGCGGCGTGCAAATTGAAGGTAGCGTT
TGACAGGGCTATGGCTGTTCTGAAGGGATTGCGTAGTCAAGTAGAGGAGATACCGCGTGACTCTACTGCGACTGTTGACA
CCAATACGCAAGATGGCATTGCTGGACGAGTTCAAAACGCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20725.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis