Browse Element(s) Details


OsAffx.20772.1.S1_at

Description tigr:9638.m00279
TID=OsAffx.20772.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0372011/11hypothetical protein
LOC_Os01g617601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20772.1.S1_at--458--1111Chr10:1662206..1662230 (25 bp)
AGTGTCATCGTCGTTGTCATAAGAT
LOC_Os10g03720
OsAffx.20772.1.S1_at--21--2151Chr10:1662245..1662269 (25 bp)
ACAGAACTTGTCCAGAGAGGCGACT
LOC_Os10g03720
OsAffx.20772.1.S1_at--450--10691Chr10:1662281..1662305 (25 bp)
TTCCAGCAGCCGGTTGACAAATCTC
LOC_Os10g03720
OsAffx.20772.1.S1_at--516--5611Chr10:1662296..1662320 (25 bp)
GACAAATCTCTTGAACAGCGCCGGC
LOC_Os10g03720
OsAffx.20772.1.S1_at--61--4911Chr10:1662336..1662360 (25 bp)
GCTTCAGAATGCGTCACCTCGAACT
LOC_Os10g03720
OsAffx.20772.1.S1_at--1150--7091Chr10:1662348..1662372 (25 bp)
GTCACCTCGAACTGCTTGTAATCGG
LOC_Os10g03720
OsAffx.20772.1.S1_at--848--8713Chr10:1662364..1662388 (25 bp)
TGTAATCGGCGTTGATGCAGGGCAC
LOC_Os10g03720
OsAffx.20772.1.S1_at--653--1331Chr10:1662397..1662421 (25 bp)
AGAGGTAGCACCACCGCTTGGACAG
LOC_Os10g03720
OsAffx.20772.1.S1_at--1082--7151Chr10:1662429..1662453 (25 bp)
GTCTACACTGCCTGGCGCGAGGTGA
LOC_Os10g03720
OsAffx.20772.1.S1_at--820--952Chr10:1662474..1662498 (25 bp)
AGGACTCCTTCAGGGAGGTCGCTGA
LOC_Os10g03720
OsAffx.20772.1.S1_at--749--10691Chr10:1662546..1662570 (25 bp)
TTGCCAGGCGATCCTTCCATGGCGG
LOC_Os10g03720
Target Sequence 
AGTGTCATCGTCGTTGTCATAAGATATGGAATACCGGAGACAGAACTTGTCCAGAGAGGCGACTGGGTCGCGGAGTTCCA
GCAGCCGGTTGACAAATCTCTTGAACAGCGCCGGCGCCTCACCGTCTCCCGCTTCAGAATGCGTCACCTCGAACTGCTTG
TAATCGGCGTTGATGCAGGGCACGGAGCGCCAGAGGTAGCACCACCGCTTGGACAGCACGCACGTCTACACTGCCTGGCG
CGAGGTGAGGAAGGACATGATGTGGTGGAGGACTCCTTCAGGGAGGTCGCTGAGCCTGTCAGTACAGGGGGCGCTCCCCG
GGGACGTGGGCTGCACGCGCTTGCCAGGCGATCCTTCCATGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis