Browse Element(s) Details


OsAffx.20810.1.S1_at

Description gb:NM_194540.1
DB_XREF= gi:37530439
TID=OsAffx.20810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015O22.6), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0190011/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein
LOC_Os10g01890OsAffx.435.1.S1_at11/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01890OsAffx.19377.1.S1_at1/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01900OsAffx.20810.1.S1_at11/1110+558728..559919retrotransposon protein, putative, LINE subclass
LOC_Os10g01910OsAffx.20809.1.S1_at11/1110+560328..565291retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g01920Os.46590.1.S1_at11/1110+567171..568806Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_x_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.2.S1_s_at1/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01940NANA10+578743..581549hypothetical protein
LOC_Os10g01950OsAffx.22699.1.S1_x_at2/1110+582287..586057retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20810.1.S1_at--1113--2831Chr10:559281..559305 (25 bp)
AAGTAGAGGTGGTTTGTTTGCAAGA
LOC_Os10g01900
OsAffx.20810.1.S1_at--936--131Chr10:559252..559276 (25 bp)
ATTAGAGTGAGTTTTGCAGCCAATG
LOC_Os10g01900
OsAffx.20810.1.S1_at--1121--1351Chr10:559187..559211 (25 bp)
AACTAAACCGGCTGAGGGTCATTCT
LOC_Os10g01900
OsAffx.20810.1.S1_at--769--6131Chr10:559174..559198 (25 bp)
GAGGGTCATTCTGGGAGTTTGTTAA
LOC_Os10g01900
OsAffx.20810.1.S1_at--1132--6871Chr10:559039..559063 (25 bp)
GTATATGGGCCAGTTCAAACAGATA
LOC_Os10g01900
OsAffx.20810.1.S1_at--627--6491Chr10:559009..559033 (25 bp)
GATAGATTTCTCCATGAATTGACTG
LOC_Os10g01900
OsAffx.20810.1.S1_at--8--6251Chr10:558888..558912 (25 bp)
GATGGGCTGCCAAATTTAATGCTTT
LOC_Os10g01900
OsAffx.20810.1.S1_at--329--3011Chr10:558871..558895 (25 bp)
AATGCTTTTATTTCTACTGCTGAAT
LOC_Os10g01900
OsAffx.20810.1.S1_at--565--7631Chr10:558827..558851 (25 bp)
GGGAGGCAAATATACCAGGACAAAC
LOC_Os10g01900
OsAffx.20810.1.S1_at--639--1251Chr10:558773..558797 (25 bp)
AGATAGGGTTTTGGTGTCTGCTTCC
LOC_Os10g01900
OsAffx.20810.1.S1_at--612--10851Chr10:558763..558787 (25 bp)
TTGGTGTCTGCTTCCTGGGATAATC
LOC_Os10g01900
Target Sequence 
AAGTAGAGGTGGTTTGTTTGCAAGAAACAATTAGAGTGAGTTTTGCAGCCAATGAATTGGATAGATTCTGTGGGGGGAGG
GACTTTCACTGGTTAACTAAACCGGCTGAGGGTCATTCTGGGAGTTTGTTAATGGGGGTTAACTTGGAGATGGTGGATGT
AGTGGAAGTTGACCTAGGGGAGTTTTTCATAAGTATGTTGGTAGAATCAAAAAGAGAGAAGAAAAGATGGAGGATTGTTA
ATGTATATGGGCCAGTTCAAACAGATAAGAAAGATAGATTTCTCCATGAATTGACTGAGATGGTGCTGGTGGAGCAAGAG
GCTGTAATGATAGGGGGAGACTACAATTTAGTAAGAAGTGCTGAGGAAAAGTCTAATAGTATAATCAACAAGAGATGGGC
TGCCAAATTTAATGCTTTTATTTCTACTGCTGAATTAAGAGAGTTACATAGAGGGGGAGGCAAATATACCAGGACAAACA
AACAAACAAATCCAGTGAGGGAAGTTCTAGATAGGGTTTTGGTGTCTGCTTCCTGGGATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis