Browse Element(s) Details


OsAffx.20913.1.S1_at

Description gb:XM_354288.1
DB_XREF= gi:35190009
TID=OsAffx.20913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g053543/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20913.1.S1_at--890--72Chr07:15352071..15352095 (25 bp)
ATTGCCACATATGCGCCACGTTAAT
NONE
OsAffx.20913.1.S1_at--136--10692Chr07:15352072..15352096 (25 bp)
TTGCCACATATGCGCCACGTTAATG
NONE
OsAffx.20913.1.S1_at--708--9192Chr07:15352073..15352097 (25 bp)
TGCCACATATGCGCCACGTTAATGC
NONE
OsAffx.20913.1.S1_at--826--27516Chr12:4264432..4264457 (25 bp)
AAGACAAGTCAAATTTGCCACGTAG
NONE
OsAffx.20913.1.S1_at--597--14119Chr12:4264437..4264458 (22 bp)
AGACAAGTCAAATTTGCCACGTAGG
NONE
OsAffx.20913.1.S1_at--373--55719Chr12:4264437..4264459 (23 bp)
GACAAGTCAAATTTGCCACGTAGGC
NONE
OsAffx.20913.1.S1_at--720--8095Chr09:19978481..19978505 (25 bp)
GGACCTCATCTGCACTAGTTTTGAT
NONE
OsAffx.20913.1.S1_at--831--5837Chr09:19978482..19978506 (25 bp)
GACCTCATCTGCACTAGTTTTGATA
NONE
OsAffx.20913.1.S1_at--573--1755Chr09:19978483..19978506 (24 bp)
ACCTCATCTGCACTAGTTTTGATAA
NONE
OsAffx.20913.1.S1_at--741--4292Chr07:15352175..15352199 (25 bp)
CCTCATCTGCACTAGTTTTGATAAT
NONE
OsAffx.20913.1.S1_at--859--3753Chr07:15352176..15352200 (25 bp)
CTCATCTGCACTAGTTTTGATAATT
NONE
Target Sequence 
ATTGCCACATATGCGCCACGTTAATGCCACATCAGATGAAGACAAGTCAAATTTGCCACGTAGGCGCCACGTCAACCAAA
ACCACTCTCAAAACCGTCGAGGGACCTCATCTGCACTAGTTTTGATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis