Browse Element(s) Details


OsAffx.20927.2.S1_at

Description gb:XM_354249.1
DB_XREF= gi:35189931
GEN=P0483E06.16
TID=OsAffx.20927.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g338401/11hypothetical protein
LOC_Os05g151901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20927.2.S1_at--739--6492Chr07:7587601..7587625 (25 bp)
GATAGGATCGCCGTAGTCACCAGGA
NONE
OsAffx.20927.2.S1_at--180--51Chr07:9275816..9275840 (25 bp)
ATTGTCTTCGTTGTCATCAGGAGGC
NONE
OsAffx.20927.2.S1_at--1090--9631Chr07:9275800..9275824 (25 bp)
TCAGGAGGCAATTCTCGTAGGTCAC
NONE
OsAffx.20927.2.S1_at--756--6931Chr07:9275784..9275808 (25 bp)
GTAGGTCACGAGAATGTTGTCCATT
NONE
OsAffx.20927.2.S1_at--1130--7171Chr07:9275642..9275662 (21 bp)
GTCGAGCAACGTAGCGGTCCTTGTA
NONE
OsAffx.20927.2.S1_at--584--7771Chr07:9275627..9275651 (25 bp)
GGTCCTTGTACCACGACTTCTAAAG
NONE
OsAffx.20927.2.S1_at--837--10052Chr05:8601563..8601584 (22 bp)
TAGTCTTCGACCAGCAACGTAGCGG
LOC_Os05g15190
OsAffx.20927.2.S1_at--961--3791Chr07:9275556..9275580 (25 bp)
CTCGCACCTCTATTTCAAAACGGTC
NONE
OsAffx.20927.2.S1_at--262--2571NONE
AACGGTCGAGAGTCGGTCCTACTAT
NONE
OsAffx.20927.2.S1_at--413--10211Chr07:9275252..9275276 (25 bp)
TATTCCTTTACGCTGTTCCGACAAG
NONE
OsAffx.20927.2.S1_at--336--7119Chr12:16739217..16739238 (22 bp)
GTCAGCTTCAGCATGGTTTGTTATA
NONE
Target Sequence 
GATAGGATCGCCGTAGTCACCAGGACGACAACGTCTAGGATTAACAGAATCAGAGCGACAATGGACAAGGTTAACAACAT
CACGACATCACACAAAGACAAAACTCGAGATCCCCAGACTTTTAGAGGGCCCGAGGATGAGGTAGTAGGTCTAGGAGCCG
AACCTCCGACTACGATAATTCCTCATTGTCTTCGTTGTCATCAGGAGGCAATTCTCGTAGGTCACGAGAATGTTGTCCAT
TTGTTTCTCTGGATTCCCTTCAAGTGGTCGAGCAACGTAGCGGTCCTTGTACCACGACTTCTAAAGGTCGAGGTACGACT
ACGACTAGTCTTCGACCAGCAACGTAGCGGTCCTCGCACCTCTATTTCAAAACGGTCGAGAGTCGGTCCTACTATTCCTT
TACGCTGTTCCGACAAGCCTCCAAGAAACCCATGGGAATTTTGGCTGAGGACGCCCAGAGCAGATAAGGGGCTAGGACTT
GTCAGCTTCAGCATGGTTTGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20927.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis