Browse Element(s) Details


OsAffx.20930.1.S1_at

Description tigr:9635.m01577
TID=OsAffx.20930.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15780OsAffx.19542.3.S1_x_at5/117+9159146..9162873retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15790NANA7+9165791..9168833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.14491.2.S1_x_at4/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.47463.1.S1_x_at3/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15809NANA7+9180882..9181436NA
LOC_Os07g15820OsAffx.20930.1.S1_at11/117+9187199..9187566hypothetical protein
LOC_Os07g15830OsAffx.31892.3.S1_at10/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.31892.1.S1_x_at4/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.4864.1.S1_at1/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15840OsAffx.8326.1.S1_x_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15840OsAffx.19950.1.S1_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15850OsAffx.4856.1.S1_x_at1/117+9204802..9210438retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20930.1.S1_at--939--7791Chr07:9187329..9187353 (25 bp)
GGTCGGAGGACGAGCCTACTGCCAC
LOC_Os07g15820
OsAffx.20930.1.S1_at--498--8011Chr07:9187325..9187349 (25 bp)
GGAGGACGAGCCTACTGCCACCGTC
LOC_Os07g15820
OsAffx.20930.1.S1_at--410--4011Chr07:9187304..9187328 (25 bp)
CGTCTCTGCTCACCGTGAAACTCAG
LOC_Os07g15820
OsAffx.20930.1.S1_at--1001--9671Chr07:9187295..9187319 (25 bp)
TCACCGTGAAACTCAGGCCACTAGG
LOC_Os07g15820
OsAffx.20930.1.S1_at--137--5551Chr07:9187288..9187312 (25 bp)
GAAACTCAGGCCACTAGGGATGTTG
LOC_Os07g15820
OsAffx.20930.1.S1_at--619--3751Chr07:9187284..9187308 (25 bp)
CTCAGGCCACTAGGGATGTTGAGGA
LOC_Os07g15820
OsAffx.20930.1.S1_at--1029--951Chr07:9187263..9187287 (25 bp)
AGGACGGTGGTGAAGTCGGAGGCAT
LOC_Os07g15820
OsAffx.20930.1.S1_at--51--9451Chr07:9187248..9187272 (25 bp)
TCGGAGGCATGGGACCTCAAGGCTT
LOC_Os07g15820
OsAffx.20930.1.S1_at--926--911Chr07:9187244..9187268 (25 bp)
AGGCATGGGACCTCAAGGCTTCCGA
LOC_Os07g15820
OsAffx.20930.1.S1_at--882--791Chr07:9187240..9187264 (25 bp)
ATGGGACCTCAAGGCTTCCGAATCC
LOC_Os07g15820
OsAffx.20930.1.S1_at--318--1751Chr07:9187235..9187259 (25 bp)
ACCTCAAGGCTTCCGAATCCTGGAG
LOC_Os07g15820
Target Sequence 
GGTCGGAGGACGAGCCTACTGCCACCGTCTCTGCTCACCGTGAAACTCAGGCCACTAGGGATGTTGAGGACGGTGGTGAA
GTCGGAGGCATGGGACCTCAAGGCTTCCGAATCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis