Browse Element(s) Details


OsAffx.20939.1.S1_at

Description gb:XM_354224.1
DB_XREF= gi:35189881
TID=OsAffx.20939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g058703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class
LOC_Os10g05820Os.21524.1.S1_at11/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.21524.2.S1_x_at8/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.46085.1.S1_x_at5/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20939.1.S1_at--258--8054Chr10:2947320..2947344 (25 bp)
GGAGAAATCCGAGCCGTCCAGGTGA
LOC_Os10g05870
OsAffx.20939.1.S1_at--1013--2254Chr10:2947324..2947348 (25 bp)
AAATCCGAGCCGTCCAGGTGAAAGC
LOC_Os10g05870
OsAffx.20939.1.S1_at--312--4098Chr10:2947329..2947353 (25 bp)
CGAGCCGTCCAGGTGAAAGCAGATG
LOC_Os10g05870
OsAffx.20939.1.S1_at--404--3431Chr07:8771431..8771769 (25 bp)
CAGATGGCGTATTGACGGTGAAATA
NONE
OsAffx.20939.1.S1_at--647--10111Chr07:8771771..8771795 (25 bp)
TATGATTCAAGGACCGTCAACGCAA
NONE
OsAffx.20939.1.S1_at--1097--7071Chr07:8771786..8771810 (25 bp)
GTCAACGCAACCCAGAACCGATATC
NONE
OsAffx.20939.1.S1_at--39--3411Chr07:8771798..8771822 (25 bp)
CAGAACCGATATCGGCCGGTCAAAT
NONE
OsAffx.20939.1.S1_at--1153--211Chr07:8771806..8771830 (25 bp)
ATATCGGCCGGTCAAATTGTCGAGC
NONE
OsAffx.20939.1.S1_at--553--3971Chr07:8771814..8771838 (25 bp)
CGGTCAAATTGTCGAGCCAGCTGCT
NONE
OsAffx.20939.1.S1_at--555--3171Chr07:8771820..8771844 (25 bp)
AATTGTCGAGCCAGCTGCTCGTAAC
NONE
OsAffx.20939.1.S1_at--1134--1591Chr07:8771832..8771856 (25 bp)
AGCTGCTCGTAACGCTCGCAACACT
NONE
Target Sequence 
GGAGAAATCCGAGCCGTCCAGGTGAAAGCAGATGGCGTATTGACGGTGAAATATTATGATTCAAGGACCGTCAACGCAAC
CCAGAACCGATATCGGCCGGTCAAATTGTCGAGCCAGCTGCTCGTAACGCTCGCAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis