Browse Element(s) Details


OsAffx.20947.1.S1_at

Description gb:XM_354200.1
DB_XREF= gi:35189833
TID=OsAffx.20947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g105701/11meiotic asynaptic mutant 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20947.1.S1_at--211--1798Chr11:6562898..6562919 (22 bp)
AACCTAAACCGACAACATATGCCGT
NONE
OsAffx.20947.1.S1_at--1127--1717Chr11:6562899..6562919 (21 bp)
ACCTAAACCGACAACATATGCCGTG
NONE
OsAffx.20947.1.S1_at--523--4177Chr11:6562900..6562919 (20 bp)
CCTAAACCGACAACATATGCCGTGT
NONE
OsAffx.20947.1.S1_at--695--3714Chr07:7803688..7803712 (25 bp)
CTAAACCGACAACATATGCCGTGTC
NONE
OsAffx.20947.1.S1_at--709--9833Chr07:7803689..7803713 (25 bp)
TAAACCGACAACATATGCCGTGTCA
NONE
OsAffx.20947.1.S1_at--687--2372Chr07:7803690..7803714 (25 bp)
AAACCGACAACATATGCCGTGTCAT
NONE
OsAffx.20947.1.S1_at--1150--2612Chr07:7803691..7803715 (25 bp)
AACCGACAACATATGCCGTGTCATA
NONE
OsAffx.20947.1.S1_at--586--17910Chr07:7803692..7803716 (25 bp)
ACCGACAACATATGCCGTGTCATAT
NONE
OsAffx.20947.1.S1_at--719--7911Chr07:7803721..7803745 (25 bp)
GGATTCGGCTCAACCGGCTAACCTC
NONE
OsAffx.20947.1.S1_at--911--6571Chr07:7803722..7803746 (25 bp)
GATTCGGCTCAACCGGCTAACCTCG
NONE
OsAffx.20947.1.S1_at--453--91Chr07:7803723..7803747 (25 bp)
ATTCGGCTCAACCGGCTAACCTCGT
NONE
Target Sequence 
AACCTAAACCGACAACATATGCCGTGTCATATTGTCGGATTCGGCTCAACCGGCTAACCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis