Browse Element(s) Details


OsAffx.21039.2.S1_at

Description tigr:9635.m01882
TID=OsAffx.21039.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1866011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18630OsAffx.10384.2.S1_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.2.S1_s_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.1.S1_at1/117+11005588..11006335hypothetical protein
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific
LOC_Os07g18660OsAffx.21039.2.S1_at11/117+11024900..11029628hypothetical protein
LOC_Os07g18660OsAffx.28511.1.S1_at1/117+11024900..11029628hypothetical protein
LOC_Os07g18670OsAffx.28511.1.S1_at11/117+11031928..11033821hypothetical protein
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21039.2.S1_at--80--9491Chr07:11029577..11029596 (20 bp)
TTTCGGCCACTACCGGAACGTTGAG
LOC_Os07g18660
OsAffx.21039.2.S1_at--785--3311Chr07:11029111..11029589 (25 bp)
CACTACCGGAACGTTGAGGCCAAAG
LOC_Os07g18660
OsAffx.21039.2.S1_at--572--1871Chr07:11029101..11029123 (23 bp)
ACGTTGAGGCCAAAGAAGTGCTGGT
LOC_Os07g18660
OsAffx.21039.2.S1_at--1009--10271Chr07:11026431..11026455 (25 bp)
TTTGCGGAGCATGTGGCGGGTGCTT
LOC_Os07g18660
OsAffx.21039.2.S1_at--486--7711Chr07:11026414..11026438 (25 bp)
GGGTGCTTCATCCTCTAAAAGAACA
LOC_Os07g18660
OsAffx.21039.2.S1_at--321--5951Chr07:11026384..11026408 (25 bp)
GAGAATGTTACAAGAACTTAAGGCT
LOC_Os07g18660
OsAffx.21039.2.S1_at--4--10491Chr07:11026367..11026391 (25 bp)
TTAAGGCTAGCCATGGGATCCCCAT
LOC_Os07g18660
OsAffx.21039.2.S1_at--10--811Chr07:11026355..11026379 (25 bp)
ATGGGATCCCCATGCATTGGGAGCC
LOC_Os07g18660
OsAffx.21039.2.S1_at--1119--6371Chr07:11026351..11026375 (25 bp)
GATCCCCATGCATTGGGAGCCAAGA
LOC_Os07g18660
OsAffx.21039.2.S1_at--1005--8631Chr07:11025961..11026362 (25 bp)
TGGGAGCCAAGAAGGTTCACCAATG
LOC_Os07g18660
OsAffx.21039.2.S1_at--294--4391Chr07:11025956..11026357 (25 bp)
GCCAAGAAGGTTCACCAATGGCAAC
LOC_Os07g18660
Target Sequence 
TTTCGGCCACTACCGGAACGTTGAGGCCAAAGAAGTGCTGGTGGTGCAGAGATTTGCGGAGCATGTGGCGGGTGCTTCAT
CCTCTAAAAGAACAAGGAAGAGAATGTTACAAGAACTTAAGGCTAGCCATGGGATCCCCATGCATTGGGAGCCAAGAAGG
TTCACCAATGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21039.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis