Browse Element(s) Details


OsAffx.2118.1.S1_at

Description tigr:9629.m02804
TID=OsAffx.2118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29160NANA1+16666091..16667034retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29170OsAffx.21754.1.S1_x_at1/111+16669267..16670626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29180Os.6680.1.S1_at10/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.23443.1.S1_at9/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.28294.2.S1_at1/111+16674057..16676335expressed protein
LOC_Os01g29190OsAffx.10525.1.S1_at11/111+16683629..16685013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29200OsAffx.21269.1.S1_x_at1/111+16688497..16688802retrotransposon protein, putative, unclassified
LOC_Os01g29210OsAffx.2118.1.S1_at11/111+16690543..16691112hypothetical protein
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein
LOC_Os01g29230OsAffx.22743.2.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_x_at11/111+16704582..16716582expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2118.1.S1_at--828--1931Chr01:16691027..16691051 (25 bp)
ACGGCGATAGAGCAGGCAGGCGGCA
LOC_Os01g29210
OsAffx.2118.1.S1_at--761--8351Chr01:16690942..16690966 (25 bp)
GGCGGCTACGCAGGCAGTCGATGGC
LOC_Os01g29210
OsAffx.2118.1.S1_at--593--3991Chr01:16690689..16690926 (25 bp)
CGTGGGTTGGCTTCGCAGGCGTGGG
LOC_Os01g29210
OsAffx.2118.1.S1_at--627--1911Chr01:16690658..16690682 (25 bp)
ACGGGCACGTGGGTCTCAGGTCGGG
LOC_Os01g29210
OsAffx.2118.1.S1_at--1100--9631Chr01:16690643..16690667 (25 bp)
TCAGGTCGGGCATGGATTCACTCGA
LOC_Os01g29210
OsAffx.2118.1.S1_at--327--7572Chr01:16690636..16690660 (25 bp)
GGGCATGGATTCACTCGACCCACTG
LOC_Os01g29210
OsAffx.2118.1.S1_at--678--3531Chr01:16690610..16690634 (25 bp)
CATCCCTAATCATTGACGCCTTGGT
LOC_Os01g29210
OsAffx.2118.1.S1_at--682--51Chr01:16690599..16690623 (25 bp)
ATTGACGCCTTGGTCCAATATGACG
LOC_Os01g29210
OsAffx.2118.1.S1_at--312--4191Chr01:16690593..16690617 (25 bp)
GCCTTGGTCCAATATGACGGTGCCA
LOC_Os01g29210
OsAffx.2118.1.S1_at--278--8532Chr04:28469870..28469891 (22 bp)
TGGTCCAATATGACGGTGCCAAAAA
NONE
OsAffx.2118.1.S1_at--566--7791Chr01:16690575..16690599 (25 bp)
GGTGCCAAAAACATTAGCGCCGCCC
LOC_Os01g29210
Target Sequence 
ACGGCGATAGAGCAGGCAGGCGGCAGCGCGAGCAGGCGGCGCGAGCGGCGGCAGGCGGCGACGCGGGCCGGCTCAAGCAG
GCGACGGCGGCTACGCAGGCAGTCGATGGCGGCGACGCGGGCCGGCGTGGGTTGGCTTCGCAGGCGTGGGTTAGGCACGG
GCACGTGGGTCTCAGGTCGGGCATGGATTCACTCGACCCACTGCCATCCCTAATCATTGACGCCTTGGTCCAATATGACG
GTGCCAAAAACATTAGCGCCGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis