Browse Element(s) Details


OsAffx.21207.1.S1_at

Description gb:NM_193560.1
DB_XREF= gi:34914203
GEN=OSJNBb0049O23.14
TID=OsAffx.21207.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.14 (OSJNBb0049O23.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g384302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38410Os.46715.1.S1_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38410Os.46715.1.S1_x_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420Os.52609.1.S1_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420OsAffx.22947.2.S1_x_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38430OsAffx.21207.1.S1_at2/111+21930258..21932192hypothetical protein
LOC_Os01g38440Os.43764.1.A1_at3/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.7.S1_x_at2/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.3.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.2.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21207.1.S1_at--718--10371Chr01:21930314..21930338 (25 bp)
TTTTCAGACCTCATTGCCGACACGG
LOC_Os01g38430
OsAffx.21207.1.S1_at--492--10711Chr01:21930285..21930309 (25 bp)
TTGCTACCTGCGCTGGACCAAAGAA
LOC_Os01g38430
OsAffx.21207.1.S1_at--941--1771Chr01:21928313..21928337 (25 bp)
ACCGGACAGCCGTTGGAAGTGCATA
NONE
OsAffx.21207.1.S1_at--905--1931NONE
ACGGCGGATTCGTCCATTCATGCAT
NONE
OsAffx.21207.1.S1_at--324--1131Chr01:21925536..21925560 (25 bp)
AGTCCAGTCCACTAGGTCGATGCAA
NONE
OsAffx.21207.1.S1_at--1042--3971Chr01:21925497..21925521 (25 bp)
CGTGATGACTTCCTCGTTAGTGCAG
NONE
OsAffx.21207.1.S1_at--336--4011Chr01:21925381..21925405 (25 bp)
CGTGCGCTGGTTTATGACTTTTTGT
NONE
OsAffx.21207.1.S1_at--950--10791Chr01:21925360..21925384 (25 bp)
TTGTTCCTCGGCATAACAGCGGTGA
NONE
OsAffx.21207.1.S1_at--190--7371Chr01:21925339..21925363 (25 bp)
GTGAGCAGCGAACCCTTCTTGTTTC
NONE
OsAffx.21207.1.S1_at--1000--5751Chr01:21925258..21925282 (25 bp)
GACGATCCCTCCGTTTTTGGAATGA
NONE
OsAffx.21207.1.S1_at--436--8511Chr01:21925241..21925265 (25 bp)
TGGAATGAAGTTCCGCTTCGTTCCC
NONE
Target Sequence 
TTTTCAGACCTCATTGCCGACACGGTCCATTGCTACCTGCGCTGGACCAAAGAAGNNNNCNGCNGGCNNNGNANNNNNNN
NCGGGAGAGGCGCGTGCGTCGGATTCGGCCACCGGACAGCCGTTGGAAGTGCATAGGCAACAGGAGTGGCGCGGACGGCG
GATTCGTCCATTCATGCATGGTGGCTCCTCCCGTCTTTCTCTTCCCCCGTACCAATCTGCTCTGTCGTCCCTATCCCCAG
CCGCCGCCTCCAGTAGTCCAGTCCACTAGGTCGATGCAACGCCGGTGGCGCAGCGTGATGACTTCCTCGTTAGTGCAGGA
GCAGCGCAATGGAGGGAGCAACGCGGCTGCGCGGCGGCGTGCGCTGGTTTATGACTTTTTGTTCCTCGGCATAACAGCGG
TGAGCAGCGAACCCTTCTTGTTTCTCCATTGCCTGTACCGCCCTTCTCGTTCCTCCACTGCTGTACCATGTTTTGGGGTC
GACGATCCCTCCGTTTTTGGAATGAAGTTCCGCTTCGTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis