Browse Element(s) Details


OsAffx.21244.1.S1_at

Description tigr:9629.m03467
TID=OsAffx.21244.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3672010/11Major Facilitator Superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein
LOC_Os01g36680OsAffx.19542.3.S1_x_at8/111+20692999..20697221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g36690NANA1+20700588..20701642hypothetical protein
LOC_Os01g36700OsAffx.20858.1.S1_x_at11/111+20704640..20705397hypothetical protein
LOC_Os01g36700OsAffx.20858.4.S1_x_at8/111+20704640..20705397hypothetical protein
LOC_Os01g36710Os.49399.1.S1_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.2.S1_a_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.4.S1_x_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.3.S1_x_at8/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36720OsAffx.21244.1.S1_at10/111+20713042..20715241Major Facilitator Superfamily protein
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein
LOC_Os01g36740Os.53927.1.S2_at8/111+20734485..20736516expressed protein
LOC_Os01g36750NANA1+20738483..20739103retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015706biological_processnitrate transport
GO:0048527biological_processlateral root development
GO:0016020cellular_componentmembrane
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21244.1.S1_at--158--2591Chr01:20714362..20714386 (25 bp)
AACGTGGCGGCGGACTTCTTCCGCA
LOC_Os01g36720
OsAffx.21244.1.S1_at--1148--5671Chr01:20714350..20714374 (25 bp)
GACTTCTTCCGCAGGCGGTTCCGGC
LOC_Os01g36720
OsAffx.21244.1.S1_at--578--3891Chr01:20714206..20714230 (25 bp)
CTGTGGGCGCTGTGGGCCGTGCAGA
LOC_Os01g36720
OsAffx.21244.1.S1_at--748--491Chr01:20714050..20714074 (25 bp)
ATCGTTCCCTTCGTCTGCAAAAGGT
LOC_Os01g36720
OsAffx.21244.1.S1_at--259--9411NONE
TCGTCTGCAAAAGGTCGCTGGGCGT
NONE
OsAffx.21244.1.S1_at--773--7491Chr01:20713266..20713290 (25 bp)
GTGGTGTCGGGCATGACGGCGAGCG
LOC_Os01g36720
OsAffx.21244.1.S1_at--914--6391Chr01:20713225..20713249 (25 bp)
GATCGTGACGAACCGGCTCTTCTTC
LOC_Os01g36720
OsAffx.21244.1.S1_at--579--9551Chr01:20713205..20713229 (25 bp)
TCTTCAGCGGGTCCAGGTACACGGT
LOC_Os01g36720
OsAffx.21244.1.S1_at--942--9611Chr01:20713121..20713145 (25 bp)
TCATCCATTTCCGGCGACAGGGCGG
LOC_Os01g36720
OsAffx.21244.1.S1_at--756--2111Chr01:20713105..20713129 (25 bp)
ACAGGGCGGCATGTTCTGTGGCCCA
LOC_Os01g36720
OsAffx.21244.1.S1_at--869--8791Chr01:20713094..20713118 (25 bp)
TGTTCTGTGGCCCATCGGCCACGAT
LOC_Os01g36720
Target Sequence 
AACGTGGCGGCGGACTTCTTCCGCAGGCGGTTCCGGCTGCCCATGGAGGCCGCGGGCGCCGCCGCGGCGTGCTTCGGCGC
GATGAACGCGGTGGCGCGGCCGGCCGGAGGGGTGGCCTCCGACGAGGTGGCGAGGCGGTTCGGGATGCGCGGGCGGCTGT
GGGCGCTGTGGGCCGTGCAGAGCGCCGGCGCCGCGCTCTGTGTGCTCGTCGGCAGGATGGGCGCCGCGGAGGCGCCGTCG
CTGGCGGCGACCGTGGCCGTCATGGTGGCGTGCGCGGCGTTCGTGCAGGCCGCCTCCGGCCTCACCTTCGGCATCGTTCC
CTTCGTCTGCAAAAGGTCGCTGGGCGTGGTGTCGGGCATGACGGCGAGCGGCGGCGCGGTGGGGGCGATCGTGACGAACC
GGCTCTTCTTCAGCGGGTCCAGGTACACGGTGGAGGAGGCCATCTCCTGCACCGGCATCACCAGCCTCCTCTGCACGCTC
CCCGTCGCCCTCATCCATTTCCGGCGACAGGGCGGCATGTTCTGTGGCCCATCGGCCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis