Browse Element(s) Details


OsAffx.21272.1.S1_x_at

Description tigr:9629.m03326
TID=OsAffx.21272.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3534011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein
LOC_Os01g35330Os.46604.1.S1_s_at11/111+19876035..19876948expressed protein
LOC_Os01g35330Os.46431.1.S1_at10/111+19876035..19876948expressed protein
LOC_Os01g35340OsAffx.21272.1.S1_x_at11/111+19878442..19878675hypothetical protein
LOC_Os01g35360NANA1+19887181..19888530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35370Os.40360.1.S1_x_at1/111+19894933..19895958hypothetical protein
LOC_Os01g35380OsAffx.1412.2.S1_at11/111+19897053..19899511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35390NANA1+19899835..19903567retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21272.1.S1_x_at--499--8071Chr01:19878598..19878622 (25 bp)
GGAGCACGCTGAGAGGACGATCCCT
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--910--8891Chr01:19878589..19878613 (25 bp)
TGAGAGGACGATCCCTCCTGAGCAG
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--319--5391Chr01:19878565..19878589 (25 bp)
GAAGCAGCTGAGAACAGACATGGAG
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--127--2731Chr01:19878564..19878588 (25 bp)
AAGCAGCTGAGAACAGACATGGAGC
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--448--1511Chr01:19878563..19878587 (25 bp)
AGCAGCTGAGAACAGACATGGAGCA
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--745--3391Chr01:19878561..19878585 (25 bp)
CAGCTGAGAACAGACATGGAGCAGT
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--356--1611Chr01:19878560..19878584 (25 bp)
AGCTGAGAACAGACATGGAGCAGTG
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--659--1431Chr01:19878555..19878579 (25 bp)
AGAACAGACATGGAGCAGTGGGCTT
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--540--1531Chr01:19878542..19878566 (25 bp)
AGCAGTGGGCTTGCAGGCTTCGCTC
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--308--1111Chr01:19878539..19878563 (25 bp)
AGTGGGCTTGCAGGCTTCGCTCCGC
LOC_Os01g35340
OsAffx.21272.1.S1_x_at--765--3531Chr01:19878505..19878529 (25 bp)
CATCGAGGACATCTTGGACCTCGCT
LOC_Os01g35340
Target Sequence 
GGAGCACGCTGAGAGGACGATCCCTCCTGAGCAGAAGCAGCTGAGAACAGACATGGAGCAGTGGGCTTGCAGGCTTCGCT
CCGCCTTCTACGACATCGAGGACATCTTGGACCTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21272.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis