Browse Element(s) Details


OsAffx.21285.2.S1_at

Description tigr:9629.m03279
TID=OsAffx.21285.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3489011/11glycosyl transferase family 48 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein
LOC_Os01g34920Os.41043.1.S1_at10/111+19622416..19628985Beta-galactosidase precursor, putative, expressed
LOC_Os01g34930Os.20616.2.S1_x_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.2.S1_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.1.S1_at10/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21285.2.S1_at--973--1911Chr01:19594082..19594106 (25 bp)
ACGGGCAATTGCTGATATCAAATTT
LOC_Os01g34890
OsAffx.21285.2.S1_at--235--3131Chr01:19594062..19594086 (25 bp)
AATTTACCTATGTTGTCTCTTGTCA
LOC_Os01g34890
OsAffx.21285.2.S1_at--1111--9511Chr01:19594047..19594071 (25 bp)
TCTCTTGTCAAGTCTATGGAATGCA
LOC_Os01g34890
OsAffx.21285.2.S1_at--547--7951Chr01:19594010..19594034 (25 bp)
GGATCCCAAAGACAAAGCTTGCTAT
LOC_Os01g34890
OsAffx.21285.2.S1_at--995--2671Chr01:19593996..19594020 (25 bp)
AAGCTTGCTATTTAAACATCCTTAA
LOC_Os01g34890
OsAffx.21285.2.S1_at--994--9611Chr01:19593882..19593993 (25 bp)
TCATGTTAATGTACCCATCGTTACG
LOC_Os01g34890
OsAffx.21285.2.S1_at--1017--1951Chr01:19592577..19592691 (25 bp)
ACTGGGAGTGTTTCATCACTTGCTT
LOC_Os01g34890
OsAffx.21285.2.S1_at--451--9691Chr01:19592562..19592586 (25 bp)
TCACTTGCTTGGTTTATGTCCAACC
LOC_Os01g34890
OsAffx.21285.2.S1_at--834--5431Chr01:19592535..19592559 (25 bp)
GAGACCAGTTTTGTTACCATTGGGC
LOC_Os01g34890
OsAffx.21285.2.S1_at--883--1731Chr01:19592520..19592544 (25 bp)
ACCATTGGGCAACGAGTCTTGGCTA
LOC_Os01g34890
OsAffx.21285.2.S1_at--1139--7131Chr01:19592510..19592529 (20 bp)
GTCTTGGCTAATCCTCTCAATTTTT
LOC_Os01g34890
Target Sequence 
ACGGGCAATTGCTGATATCAAATTTACCTATGTTGTCTCTTGTCAAGTCTATGGAATGCAAAAGACATCCAAGGATCCCA
AAGACAAAGCTTGCTATTTAAACATCCTTAATCTCATGTTAATGTACCCATCGTTACGTGTTGCTTATATTGATGAAGTA
GAAGCTCCAGCTGGTAATGGGACAACAGAGAAGACTTATTATTCTGTTCTTGTCAAAGGAGGTGAAAAGTATGATGAGGA
AATTTATCGCATCAAGCTTCCTGGCAAACCTACAGATATTGGAGAGGGAAAACCTGAAAATCAAAACCATGCCATTGTTT
TCACCAGGGGAGAGGCACTCCAGGCCATTGATATGAATCAGGATAATTACCTCGAAGAGGCATTTAAAATGAGAAATGTG
CTGGAGGAGTTTGAGAGTGAAAAGTATGGAAAGAGAAAACCCACTATATTAGGCCTCCGTGAGCACATTTTTACTGGGAG
TGTTTCATCACTTGCTTGGTTTATGTCCAACCAAGAGACCAGTTTTGTTACCATTGGGCAACGAGTCTTGGCTAATCCTC
TCAATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21285.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis