Browse Element(s) Details


OsAffx.21337.1.S1_x_at

Description gb:NM_192881.1
DB_XREF= gi:34912845
GEN=P0006C01.7
TID=OsAffx.21337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0006C01.7 (P0006C01.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g435706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21337.1.S1_x_at--115--9011Chr01:25284303..25284327 (25 bp)
TGAATTCTAGTCTTCGTGTCGTCAA
NONE
OsAffx.21337.1.S1_x_at--1035--10051Chr01:25284146..25284320 (25 bp)
TAGTCTTCGTGTCGTCAAAGCCTCA
NONE
OsAffx.21337.1.S1_x_at--1112--8711Chr01:25284137..25284311 (25 bp)
TGTCGTCAAAGCCTCACTGTCGTCG
NONE
OsAffx.21337.1.S1_x_at--510--7091Chr01:25284133..25284302 (25 bp)
GTCAAAGCCTCACTGTCGTCGGCCA
NONE
OsAffx.21337.1.S1_x_at--294--9291Chr01:25283224..25283243 (20 bp)
TCCGGGTCGAATCCTGGCGGCGGCG
NONE
OsAffx.21337.1.S1_x_at--669--3231Chr01:25282985..25283009 (25 bp)
CAAGAGTAAGGAGGGCCGCCGCACA
LOC_Os01g43570
OsAffx.21337.1.S1_x_at--694--4511Chr01:25282968..25282992 (25 bp)
GCCGCACAGGAGGAAGTCGCCTTCG
LOC_Os01g43570
OsAffx.21337.1.S1_x_at--56--951Chr01:25282958..25282982 (25 bp)
AGGAAGTCGCCTTCGTGGCTGCCGC
LOC_Os01g43570
OsAffx.21337.1.S1_x_at--579--8331Chr01:25282942..25282966 (25 bp)
GGCTGCCGCCACCAATCTAGAAGAA
LOC_Os01g43570
OsAffx.21337.1.S1_x_at--140--3071Chr01:25282929..25282953 (25 bp)
AATCTAGAAGAACTCAATGGCACAG
LOC_Os01g43570
OsAffx.21337.1.S1_x_at--1006--3191Chr01:25282915..25282939 (25 bp)
CAATGGCACAGTGGAAGAGGTCGAC
LOC_Os01g43570
Target Sequence 
TGAATTCTAGTCTTCGTGTCGTCAAAGCCTCACTGTCGTCGGCCACCGAGTCCCACTACCACGCCGCTCCCGATCGCACC
CCCTCCGCCTTCGTCGACCTCCTCTACCGCTGGCACCGCTCCGGGTCGAATCCTGGCGGCGGCGGAGGATGCGGTGATGG
CGGCGAGGAGGAGATGACAAGGGAGGGGCGAAGTGTAGCAGCAAGAGTAAGGAGGGCCGCCGCACAGGAGGAAGTCGCCT
TCGTGGCTGCCGCCACCAATCTAGAAGAACTCAATGGCACAGTGGAAGAGGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21337.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis