Browse Element(s) Details


OsAffx.21359.1.S1_at

Description tigr:9629.m04112
TID=OsAffx.21359.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21359.1.S1_at--723--1931Chr01:24706964..24706988 (25 bp)
ACGGCGATGGCATCGCCTACGGCGA
LOC_Os01g42840
OsAffx.21359.1.S1_at--391--1511Chr01:24707021..24707045 (25 bp)
AGCAGAGGACGCACGCGAACGCGCA
LOC_Os01g42840
OsAffx.21359.1.S1_at--284--4171Chr01:24707046..24707070 (25 bp)
CGCCTTCGTGTGCTCGCTGTCGCTG
LOC_Os01g42840
OsAffx.21359.1.S1_at--822--4091Chr01:24707081..24707105 (25 bp)
CGACGATGGCGCTCATGCTGCTGAG
LOC_Os01g42840
OsAffx.21359.1.S1_at--634--9451Chr01:24707171..24707195 (25 bp)
TCTGGGCGTACCACGTCACGCAGAA
LOC_Os01g42840
OsAffx.21359.1.S1_at--203--7711Chr01:24707315..24707339 (25 bp)
GGGTGCTGGTCATGGGCGCCGACGT
LOC_Os01g42840
OsAffx.21359.1.S1_at--881--4091Chr01:24707334..24707358 (25 bp)
CGACGTCGCGGGAGTTTCTGCGTTA
LOC_Os01g42840
OsAffx.21359.1.S1_at--413--1191Chr01:24707346..24707370 (25 bp)
AGTTTCTGCGTTATTCGGGTTCTGC
LOC_Os01g42840
OsAffx.21359.1.S1_at--1134--10191Chr01:24707357..24707381 (25 bp)
TATTCGGGTTCTGCCTCGCCGAGTA
LOC_Os01g42840
OsAffx.21359.1.S1_at--126--7011Chr01:24707379..24707403 (25 bp)
GTACTTGCGGCACAACGAGGCGCAT
LOC_Os01g42840
OsAffx.21359.1.S1_at--672--2211Chr01:24707390..24707414 (25 bp)
ACAACGAGGCGCATGCAGCCGTCGA
LOC_Os01g42840
Target Sequence 
ACGGCGATGGCATCGCCTACGGCGACCGGAGCAAGGAGGAGGCGGAAGAGAGGAAGAAGCAGAGGACGCACGCGAACGCG
CACGCCTTCGTGTGCTCGCTGTCGCTGCTCCTGGCGGCGACGATGGCGCTCATGCTGCTGAGCTACGGCGGCTCGCCGCT
GTGGCTCGCGTCGGAGCTGGCCGCCGTGCTCTGCCTCCTGCTCTACCTCTGGGCGTACCACGTCACGCAGAACCTCGCGG
CCGGCGCCGGCGCCGCCGTGCCCGTGGAGGCGCTCGTGTTCGCGTTCCCGCTCGTCTTCGGCGCCGGCTTCCTGGCCGCG
CTGCTCGCCGTCGCCGTCGCCCCCGTCGCCGGGGTGCTGGTCATGGGCGCCGACGTCGCGGGAGTTTCTGCGTTATTCGG
GTTCTGCCTCGCCGAGTACTTGCGGCACAACGAGGCGCATGCAGCCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis