Browse Element(s) Details


OsAffx.21421.1.S1_x_at

Description gb:NM_192515.1
DB_XREF= gi:34912113
GEN=OSJNBb0024F06.8
TID=OsAffx.21421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.8 (OSJNBb0024F06.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4019011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21421.1.S1_x_at--588--571Chr01:23004825..23004849 (25 bp)
ATCCATCTTCTACAACCTCTTCAAG
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--600--2631Chr01:23004838..23004862 (25 bp)
AACCTCTTCAAGAAAGGCGGCAGCA
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--55--1511Chr01:23004992..23005016 (25 bp)
AGCAGCCGCCGTTTTATCCCAGGCG
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--913--471Chr01:23005007..23005031 (25 bp)
ATCCCAGGCGCGCTGTCGTCTACTA
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--346--4571Chr01:23005157..23005181 (25 bp)
GCGCGAGCCCCGACGTGAACGCGAA
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--529--1831Chr01:23005175..23005199 (25 bp)
ACGCGAAGGCCGACAAGTTCATCGA
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--3--7591Chr01:23005213..23005237 (25 bp)
GGGCTTACGCTGGAGAAGATCAACT
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--698--5351Chr01:23005227..23005251 (25 bp)
GAAGATCAACTCGTACCGCGAGAAG
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--116--931Chr01:23005258..23005282 (25 bp)
AGGCAGATCCAAGACGACTCATCGT
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--978--6011Chr01:23005310..23005334 (25 bp)
GAGAGTTCATGGTCATCGGCTCCCT
LOC_Os01g40190
OsAffx.21421.1.S1_x_at--651--2791Chr01:23005352..23005376 (25 bp)
AAGAGGATATCATCTCCTTGCCGGA
LOC_Os01g40190
Target Sequence 
ATCCATCTTCTACAACCTCTTCAAGAAAGGCGGCAGCAAGAGCCGCCGCATCCACTCCGTCGCGCCGCCGCAGCCGCCTC
CGCCACCTCCGCCCACCACGCGCCGATCCAGGAAACCGCCACAGCCACCGTCCCGCCCCGCTCCTCCTCCACCGCCTCCG
CCGCAGCAGCAGCCGCCGTTTTATCCCAGGCGCGCTGTCGTCTACTACACCTACCCGCTCCCGCCGCCGTCGCCGCCGCT
GCCACCGCCGCCTCCTCCTCCGCCGCCGCCAATGTCGGAGGGGGAAGAGGAGGCGCCTCCTTCCGTCACGGCGTCGCCGG
CGCCGGCGTACTGCGCGAGCCCCGACGTGAACGCGAAGGCCGACAAGTTCATCGAGCGATTCCGCGCGGGGCTTACGCTG
GAGAAGATCAACTCGTACCGCGAGAAGTGGCAGAGGCAGATCCAAGACGACTCATCGTCGGCCATGGCCGTGGCCGAGGA
GGAGGGAGAGTTCATGGTCATCGGCTCCCTCTTCGACGACGACGACGAAGAGGATATCATCTCCTTGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21421.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis