Browse Element(s) Details


OsAffx.21471.1.S1_at

Description gb:NM_192251.1
DB_XREF= gi:34911585
GEN=P0004A09.16
TID=OsAffx.21471.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0004A09.16 (P0004A09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4516011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein
LOC_Os01g45140OsAffx.23663.1.S1_at11/111+25942711..25944201UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45150NANA1+25949851..25950624hypothetical protein
LOC_Os01g45160OsAffx.21471.1.S1_at11/111+25954106..25954720hypothetical protein
LOC_Os01g45174OsAffx.29313.1.S1_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45174OsAffx.20631.1.S1_x_at1/111+25956858..25962919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45190Os.57569.1.S1_at9/111+25963806..25967372Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os01g45200Os.11247.1.S1_at11/111+25967568..25974072NAD dependent epimerase/dehydratase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21471.1.S1_at--591--711Chr01:25954343..25954367 (25 bp)
ATGATCAGGCCAGGCGTCGCGACGA
LOC_Os01g45160
OsAffx.21471.1.S1_at--125--2771Chr01:25954376..25954400 (25 bp)
AAGACGAACCGCGTCTGGGACCTGG
LOC_Os01g45160
OsAffx.21471.1.S1_at--903--2611Chr01:25954382..25954406 (25 bp)
AACCGCGTCTGGGACCTGGACGACG
LOC_Os01g45160
OsAffx.21471.1.S1_at--32--8111Chr01:25954399..25954423 (25 bp)
GGACGACGGCCAGCTGCAGGAGTGG
LOC_Os01g45160
OsAffx.21471.1.S1_at--254--3991Chr01:25954451..25954475 (25 bp)
CGGGCAGAGCGCAAGCAGGATCGGC
LOC_Os01g45160
OsAffx.21471.1.S1_at--270--5091Chr01:25954488..25954512 (25 bp)
GCACCGGTGGTGCAGCCTCGGCAGC
LOC_Os01g45160
OsAffx.21471.1.S1_at--1029--6351Chr01:25954523..25954547 (25 bp)
GATGCCAGCGTCGACGCGATCAGTG
LOC_Os01g45160
OsAffx.21471.1.S1_at--246--9371Chr01:25954533..25954557 (25 bp)
TCGACGCGATCAGTGCCGTCGGCGA
LOC_Os01g45160
OsAffx.21471.1.S1_at--1008--5751Chr01:25954600..25954624 (25 bp)
GACGTGGGTGGAGATCTACCAGCTC
LOC_Os01g45160
OsAffx.21471.1.S1_at--600--8551Chr01:25954608..25954632 (25 bp)
TGGAGATCTACCAGCTCGGGCACTG
LOC_Os01g45160
OsAffx.21471.1.S1_at--541--2151Chr01:25954657..25954681 (25 bp)
ACAGCCCCAGGTGATCAGAGGTGAC
LOC_Os01g45160
Target Sequence 
ATGATCAGGCCAGGCGTCGCGACGACGCCGCGGAAGACGAACCGCGTCTGGGACCTGGACGACGGCCAGCTGCAGGAGTG
GCGCCCCGCCGGCGCCGACGGCGCGGTGCGGGCAGAGCGCAAGCAGGATCGGCGCGAGCCTGGCCGCACCGGTGGTGCAG
CCTCGGCAGCGCCGCCGGGCGATGCCAGCGTCGACGCGATCAGTGCCGTCGGCGAGGGCAGCGGCAGGGCGAGGCCGCGG
GTGGACACGGCGGAGAAGACGTGGGTGGAGATCTACCAGCTCGGGCACTGGGGGTTCGGCCGGCTGTCCTTCTCACAGCC
CCAGGTGATCAGAGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis