Browse Element(s) Details


OsAffx.21624.1.S1_s_at

Description gb:NM_191206.1
DB_XREF= gi:34909495
GEN=P0481E12.18
TID=OsAffx.21624.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0481E12.18 (P0481E12.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5444011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21624.1.S1_s_at--295--5911Chr01:31647584..31647608 (25 bp)
GAGCTTGCACACTGATGAAATGTTC
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--717--8811Chr01:31647522..31647546 (25 bp)
TGATTACTCCTAACCCTTTCGTGAT
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--591--6611Chr01:31647338..31647362 (25 bp)
GTTGGCTCTTCTGCAAATGGACTAT
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--143--7071Chr01:31647275..31647299 (25 bp)
GTAAGGTTTTGCTCTGATCTGTAAT
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--862--3111Chr01:31647201..31647225 (25 bp)
AATATTGTTGCATTCTTGTCTCTGA
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--1153--7151Chr01:31647184..31647208 (25 bp)
GTCTCTGAACAGTCGCACTTTGGTG
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--837--3311Chr01:31647169..31647193 (25 bp)
CACTTTGGTGCTGAAGCCACGGTTT
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--396--4411Chr01:31647154..31647178 (25 bp)
GCCACGGTTTAATTGCTAGATAGCA
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--623--10371Chr01:31647105..31647129 (25 bp)
TTTTCAACATTGCATTGTCCCCTTG
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--1100--9291Chr01:31647088..31647112 (25 bp)
TCCCCTTGTTCTGTTGTTCGTATAA
LOC_Os01g54440
OsAffx.21624.1.S1_s_at--47--8371Chr01:31647049..31647073 (25 bp)
GGCGTTCATTTTGCCTGTATAGAAC
LOC_Os01g54440
Target Sequence 
GAGCTTGCACACTGATGAAATGTTCGATTGGATTGAGGAGCACCTGAGCTGAGGTTTATGGTTGATTACTCCTAACCCTT
TCGTGATTCTCTAACTAAATATGAAAACTGTACTAATTGGAGGATCCGAGAAGATGCTGCAATCTTCAGCTTGAGGAATT
TCTGTAAAATGAATTAGGAGAGAAAAGGTGGGACGATATTGTTTGTGAAAAATAGACTTGATGTTAACTGCTGTATATTT
CTTTCGGTTGGCTCTTCTGCAAATGGACTATAAGAAGCATAAACACAGACACGGAGGTACTGTAGTTTAGTAAGGTTTTG
CTCTGATCTGTAATGGAGTAGTATAGTATCAGTTCTATGTGTATCTAGATAAATCTTTTGATGAATATTGTTGCATTCTT
GTCTCTGAACAGTCGCACTTTGGTGCTGAAGCCACGGTTTAATTGCTAGATAGCAGATGAAATAGAAAGAGAATTGTTAT
TTTCAACATTGCATTGTCCCCTTGTTCTGTTGTTCGTATAATTGCAGATAAAACAGGCGTTCATTTTGCCTGTATAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21624.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis