Browse Element(s) Details


OsAffx.21756.3.S1_x_at

Description gb:NM_187992.1
DB_XREF= gi:34903067
TID=OsAffx.21756.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g547405/11transposon protein, putative, unclassified
LOC_Os05g489105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g351202/11transposon protein, putative, unclassified, expressed
LOC_Os04g313002/11transposon protein, putative, unclassified
LOC_Os01g171101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g582201/11transposon protein, putative, unclassified
LOC_Os03g062801/11transposon protein, putative, unclassified
LOC_Os11g038301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g178601/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21756.3.S1_x_at--977--6131Chr04:19257944..19258468 (25 bp)
GAGGTGGGCAAGAAAACTAGCCGTT
NONE
OsAffx.21756.3.S1_x_at--99--7719Chr08:1692422..1692825 (25 bp)
GGTCAGACCGACCTAAGGCCTACGG
NONE
OsAffx.21756.3.S1_x_at--119--13918Chr10:18137265..18137595 (25 bp)
AGACCGCAGGTCACTTTTCAGCACA
NONE
OsAffx.21756.3.S1_x_at--964--17949Chr11:18955305..18955452 (25 bp)
ACCGCAGGTCACTTTTCAGCACAAC
NONE
OsAffx.21756.3.S1_x_at--823--70912Chr08:4034293..4034317 (25 bp)
GTCACTTTTCAGCACAACCAACCGT
NONE
OsAffx.21756.3.S1_x_at--223--27124Chr09:1516067..1516090 (24 bp)
AAGCTTATTCAAAGGGCTATCCAAC
NONE
OsAffx.21756.3.S1_x_at--244--28726Chr11:18955410..18955434 (25 bp)
AAGGGCTATCCAACCCATGAACAAT
NONE
OsAffx.21756.3.S1_x_at--116--48522Chr08:19911285..19911309 (25 bp)
GCTATCCAACCCATGAACAATCCAT
NONE
OsAffx.21756.3.S1_x_at--937--9813Chr08:894025..894144 (24 bp)
TAAACACAACTTTTATCAGGGAGAA
NONE
OsAffx.21756.3.S1_x_at--1134--10331Chr01:8978859..8978883 (25 bp)
TTTATCAGGGAGAAATAGCTCACAC
NONE
OsAffx.21756.3.S1_x_at--780--391Chr01:8978856..8978880 (25 bp)
ATCAGGGAGAAATAGCTCACACTCC
NONE
Target Sequence 
GAGGTGGGCAAGAAAACTAGCCGTTACAGGGCAATCATTGAGCCCACTCAACCTGGCCGGTCTGACAGCAGTGTAGTGGC
CGGTCAGACCGTCCACGGCTTGGTCAGACCGCCGTCGGCTCGGTCTGACCGGTTGCGGCTCTGGCGGCTCTGTATCGCCA
CCAAAAACCAGACCAGTGCAACAGACCACCCCGGTCAGACCGACCTAAGGCCTACGGTCAGACCGCAGGTCACTTTTCAG
CACAACCAACCGTTAGTAAAACGACGATATCTCTTGACTCGGATCTCGGAATTTGGCGTTCTTGGACTATATGGAAAGCT
TATTCAAAGGGCTATCCAACCCATGAACAATCCATCCAATAAACACAACTTTTATCAGGGAGAAATAGCTCACACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21756.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis