Browse Element(s) Details


OsAffx.21758.1.S1_at

Description tigr:9629.m06145
TID=OsAffx.21758.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g622809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed
LOC_Os01g62310Os.16013.1.S1_at11/111+36384212..36386416Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21758.1.S1_at--743--7851NONE
GGTTTGGCGCCACCCGTTCTTGGCT
NONE
OsAffx.21758.1.S1_at--79--2651Chr01:36365674..36365698 (25 bp)
AACCATGTCGGATTTCGACTTCGGC
NONE
OsAffx.21758.1.S1_at--369--7931Chr01:36365683..36365707 (25 bp)
GGATTTCGACTTCGGCGACTTAGAC
LOC_Os01g62280
OsAffx.21758.1.S1_at--233--2051Chr01:36365691..36365715 (25 bp)
ACTTCGGCGACTTAGACGACATGGA
LOC_Os01g62280
OsAffx.21758.1.S1_at--1014--2111Chr01:36365709..36365733 (25 bp)
ACATGGAGGCGCACAACAAGCGTGA
LOC_Os01g62280
OsAffx.21758.1.S1_at--900--3271Chr01:36365722..36365746 (25 bp)
CAACAAGCGTGAGGTGATGGTGCAT
LOC_Os01g62280
OsAffx.21758.1.S1_at--562--9031Chr01:36365742..36365766 (25 bp)
TGCATGCCAAGGAAAGGCTAGTGGA
LOC_Os01g62280
OsAffx.21758.1.S1_at--637--1091Chr01:36365761..36365785 (25 bp)
AGTGGAGTGGGCATCAAATGCAAGC
LOC_Os01g62280
OsAffx.21758.1.S1_at--689--6631Chr01:36365810..36365834 (25 bp)
GTTGTCACCGCCATTGTGTTGAAGC
LOC_Os01g62280
OsAffx.21758.1.S1_at--1126--4431Chr01:36365819..36365843 (25 bp)
GCCATTGTGTTGAAGCCGGCTAGAA
LOC_Os01g62280
OsAffx.21758.1.S1_at--958--2911Chr01:36365841..36365865 (25 bp)
GAAGGAAGGGCCGAATCCCGAATTG
LOC_Os01g62280
Target Sequence 
GGTTTGGCGCCACCCGTTCTTGGCTGGGGGCAACCATGTCGGATTTCGACTTCGGCGACTTAGACGACATGGAGGCGCAC
AACAAGCGTGAGGTGATGGTGCATGCCAAGGAAAGGCTAGTGGAGTGGGCATCAAATGCAAGCGCGGCGGGGGGGGGGGG
GGGGCGCGTTGTCACCGCCATTGTGTTGAAGCCGGCTAGAAGGAAGGGCCGAATCCCGAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis