Browse Element(s) Details


OsAffx.21772.1.S1_s_at

Description gb:NM_190391.1
DB_XREF= gi:34907865
GEN=P0031D02.21
TID=OsAffx.21772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0031D02.21 (P0031D02.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6089011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21772.1.S1_s_at--345--7571Chr01:35545914..35545938 (25 bp)
GGGCGACGGCGGAAGGCTCCACGGC
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--855--5751Chr01:35546009..35546033 (25 bp)
GACGGTGGAGACAAGCTCGGCAGCG
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--873--4091Chr01:35546095..35546119 (25 bp)
CGACGATAGGGAGGGCTGCGCCGAC
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--811--9611Chr01:35546146..35546170 (25 bp)
TCATCGTCCCCGAAGCTCTTGGCGT
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--1115--2691Chr01:35546158..35546182 (25 bp)
AAGCTCTTGGCGTCATCGTCCCATA
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--111--4651Chr01:35546167..35546191 (25 bp)
GCGTCATCGTCCCATAGCTTCACGT
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--228--7191Chr01:35546198..35546222 (25 bp)
GTCGGCCCGAAGGTCGACGCCATCA
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--590--3551Chr01:35546296..35546320 (25 bp)
CATAGTTGTTGCCAACGGCGTCTTC
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--464--2571Chr01:35546309..35546333 (25 bp)
AACGGCGTCTTCAGTGGTGGCAAAC
LOC_Os01g60890
OsAffx.21772.1.S1_s_at--876--10533Chr04:3397651..3397674 (24 bp)
TTCAGTGGTGGCAAACGGCGTCCAT
NONE
OsAffx.21772.1.S1_s_at--266--3473Chr04:3397652..3397675 (24 bp)
CAGTGGTGGCAAACGGCGTCCATCA
NONE
Target Sequence 
GGGCGACGGCGGAAGGCTCCACGGCGGCGGATCCAACGATGGGGAGGGCTGCGCCGACGGAAGACGGCTCGGGCGACGGC
GGCAGGCTCGGCGGCGACGGTGGAGACAAGCTCGGCAGCGGCGGCGTTGAGGGGCTCGGCGGCACCGGATCCTGTGGTGG
GGAAGGCGGCGGCGGCGGATCCGACGATAGGGAGGGCTGCGCCGACGGATCCGGCGGCGGCCCGACCGTCCGTCATCGTC
CCCGAAGCTCTTGGCGTCATCGTCCCATAGCTTCACGTCCCTTCGTCGGCCCGAAGGTCGACGCCATCACCCGCCGCATC
GCGTCCCTTCGCGACCGCAGCTCGGTGGCGGAGATGGAGGTGAGGGCAGAGGCGGCGGCGGCCATAGTTGTTGCCAACGG
CGTCTTCAGTGGTGGCAAACGGCGTCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21772.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis