Browse Element(s) Details


OsAffx.21866.2.S1_at

Description tigr:9635.m04268
TID=OsAffx.21866.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4261010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21866.2.S1_at--291--8331NONE
GGCTCCCAGGACGAGTTGCTTCGAA
NONE
OsAffx.21866.2.S1_at--407--2711Chr07:25501534..25501558 (25 bp)
AAGCAGTTGGCCAAACAAGCAGCAA
LOC_Os07g42610
OsAffx.21866.2.S1_at--297--5131Chr07:25501506..25501530 (25 bp)
GCAAAGCCAGCGACTTCAAAGAACT
LOC_Os07g42610
OsAffx.21866.2.S1_at--1022--6491Chr07:25501470..25501494 (25 bp)
GATAGTCCAGCTAATCACTTGCAAA
LOC_Os07g42610
OsAffx.21866.2.S1_at--472--1191Chr07:25501437..25501461 (25 bp)
AGTAGTGATTTGCTGTGTGACGCCA
LOC_Os07g42610
OsAffx.21866.2.S1_at--859--1291Chr07:25501153..25501410 (25 bp)
AGAAAATTTCGCTACTCCGCGTTCA
LOC_Os07g42610
OsAffx.21866.2.S1_at--224--4851Chr07:25501143..25501167 (25 bp)
GCTACTCCGCGTTCACAAAATCAAA
LOC_Os07g42610
OsAffx.21866.2.S1_at--588--2331Chr07:25501120..25501144 (25 bp)
AAAGATTCTTTCCTCATTCATATGA
LOC_Os07g42610
OsAffx.21866.2.S1_at--412--731Chr07:25500608..25500630 (23 bp)
ATGTTCCAATTTCAGTCGCATCCTG
LOC_Os07g42610
OsAffx.21866.2.S1_at--127--5631Chr07:25500584..25500608 (25 bp)
GACACAGAAAGAATGATCCTCGCGA
LOC_Os07g42610
OsAffx.21866.2.S1_at--1040--1751Chr07:25499664..25499688 (25 bp)
ACCTGCTCCGTTGGGTATGGACTAT
LOC_Os07g42610
Target Sequence 
GGCTCCCAGGACGAGTTGCTTCGAATTGAAAAGAAATTAGTTGACCTGGGAGGTAAGATAGTTGAGTTAGCAGCAAGCAT
GGTTTTGCAAAGCAGTTGGCCAAACAAGCAGCAAACAGCAAAGCCAGCGACTTCAAAGAACTGGAGGAATGGAGATAGTC
CAGCTAATCACTTGCAAATTACTAGTAGTAGTGATTTGCTGTGTGACGCCACAGGAAAATATATTTTTTTTGTGAGAAGA
AAATTTCGCTACTCCGCGTTCACAAAATCAAAAGATTCTTTCCTCATTCATATGAGATTAAGTTGTTGCATGGAAATGTT
CCAATTTCAGTCGCATCCTGACACAGAAAGAATGATCCTCGCGATATGGGGTTTGAAACTGACATCGGCTACGGACATCA
AGTACCTGCTCCGTTGGGTATGGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21866.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis