Browse Element(s) Details


OsAffx.21953.1.S1_at

Description gb:NM_189261.1
DB_XREF= gi:34905605
GEN=B1109A06.17
TID=OsAffx.21953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (B1109A06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g124702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein
LOC_Os06g12480Os.43764.1.A1_at11/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.7.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.2.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.3.S1_x_at1/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein
LOC_Os06g12500OsAffx.15391.1.S1_at11/116+6788041..6788851plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21953.1.S1_at--224--7731Chr01:17009408..17009432 (25 bp)
GGTGGCCTGGGCGTCATCAAACCCG
NONE
OsAffx.21953.1.S1_at--987--4411Chr01:17009404..17009428 (25 bp)
GCCTGGGCGTCATCAAACCCGGGAG
NONE
OsAffx.21953.1.S1_at--267--3391Chr01:17009358..17009382 (25 bp)
CAGCGTCGGTGATGACCTTGATGGT
NONE
OsAffx.21953.1.S1_at--528--691Chr01:17009347..17009371 (25 bp)
ATGACCTTGATGGTGTCGTCGTGGA
NONE
OsAffx.21953.1.S1_at--357--7751Chr01:17009336..17009360 (25 bp)
GGTGTCGTCGTGGATGGAGTCCCCA
NONE
OsAffx.21953.1.S1_at--642--851Chr01:17009290..17009314 (25 bp)
ATGGCAGCGGTAGGATTCGCCGGCC
NONE
OsAffx.21953.1.S1_at--192--4271NONE
CCGGCCGGCGGCTAGGAGTGATCAG
NONE
OsAffx.21953.1.S1_at--589--7651Chr01:17008349..17008373 (25 bp)
GGGAGGACTCTCGTCTGATCCATCC
NONE
OsAffx.21953.1.S1_at--293--6371Chr01:17008333..17008357 (25 bp)
GATCCATCCCATGCCACTTGTGGTG
NONE
OsAffx.21953.1.S1_at--1012--3212Chr06:6769824..6769848 (25 bp)
CAAGGTGGCGACTTTTGAGCTGCAA
LOC_Os06g12470
OsAffx.21953.1.S1_at--423--8912Chr06:6769809..6769833 (25 bp)
TGAGCTGCAACTGGGAATAGCATCT
LOC_Os06g12470
Target Sequence 
GGTGGCCTGGGCGTCATCAAACCCGGGAGGGTGTTGGAAGGAGGAGCGAACAGCGTCGGTGATGACCTTGATGGTGTCGT
CGTGGATGGAGTCCCCAGTGAGAGAGGAAGGAGCGGCCATGGCAGCGGTAGGATTCGCCGGCCGGCGGCTAGGAGTGATC
AGGAGGGGGAGGACTCTCGTCTGATCCATCCCATGCCACTTGTGGTGTTGGAAGAAGGGGAGGGCAAGGTGGCGACTTTT
GAGCTGCAACTGGGAATAGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis