Browse Element(s) Details


OsAffx.21972.1.S1_at

Description tigr:9629.m01886
TID=OsAffx.21972.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1933011/11Cpm7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21972.1.S1_at--189--9231Chr01:10932060..10932084 (25 bp)
TCCAGGATCGCGCAGCACATGCCGG
LOC_Os01g19330
OsAffx.21972.1.S1_at--584--8331Chr01:10932150..10932174 (25 bp)
GGCTGCGACGTCAATAGCCGCCAGT
LOC_Os01g19330
OsAffx.21972.1.S1_at--685--9731Chr01:10932160..10932184 (25 bp)
TCAATAGCCGCCAGTTCAAGGACGT
LOC_Os01g19330
OsAffx.21972.1.S1_at--710--9731Chr01:10932175..10932199 (25 bp)
TCAAGGACGTCATGAGGCACCTCTG
LOC_Os01g19330
OsAffx.21972.1.S1_at--167--2651Chr01:10932320..10932344 (25 bp)
AACCACGACGTCGAGCATGGCAGGG
LOC_Os01g19330
OsAffx.21972.1.S1_at--652--5791Chr01:10932380..10932404 (25 bp)
GACGAACCACCACCTGATGACCATG
LOC_Os01g19330
OsAffx.21972.1.S1_at--679--1791Chr01:10932417..10932441 (25 bp)
ACCGCAGCGGCAGATTGGTCCAGCG
LOC_Os01g19330
OsAffx.21972.1.S1_at--484--3411Chr01:10932467..10932491 (25 bp)
CAGCACGAGCGTTGGGATCAGTTAT
LOC_Os01g19330
OsAffx.21972.1.S1_at--815--7951Chr01:10932481..10932505 (25 bp)
GGATCAGTTATGACATGTTCGAGGG
LOC_Os01g19330
OsAffx.21972.1.S1_at--463--8111Chr01:10932569..10932593 (25 bp)
GGACTTCCAAATGGCAGACACCGGA
LOC_Os01g19330
OsAffx.21972.1.S1_at--969--4251Chr01:10932589..10932613 (25 bp)
CCGGAGACAACTGCTGGTGGAGTAA
LOC_Os01g19330
Target Sequence 
TCCAGGATCGCGCAGCACATGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGCGGACCAGGGTGCAGAAGCACGC
CAAGCAGCTCGGCTGCGACGTCAATAGCCGCCAGTTCAAGGACGTCATGAGGCACCTCTGGATGCCGCGCCTCGTCGAGA
GGATCCACGCCGCCGCCGCCTCGTCGGAACGCGCCGCGCCGCCGCCGTGTGCCGCCGCGCCGGCTAGTCACAGCGGCATG
TGCCACTCACCTGACCCGTCAACCACGACGTCGAGCATGGCAGGGTCGTCGGTGACGCACGGCGAGCAGTTCCCGTCGTC
GACGAACCACCACCTGATGACCATGGCCAGCGTCACCACCGCAGCGGCAGATTGGTCCAGCGAGCAATGCGGCAGCGGCA
GCGCCACCAGCACGAGCGTTGGGATCAGTTATGACATGTTCGAGGGGAGCTGGTCGGAGCTCCTCGCCCGCGCCTACGAC
GACGACGGCGCCGATTCTTCGCTGCTGCCGGACTTCCAAATGGCAGACACCGGAGACAACTGCTGGTGGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis