Browse Element(s) Details


OsAffx.21980.2.S1_s_at

Description tigr:9629.m02907
TID=OsAffx.21980.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Annexin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3127011/11Annexin-like protein RJ4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31230OsAffx.22633.1.S1_at1/111+17404852..17408465retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31240Os.24648.1.A1_at1/111+17409517..17413264retrotransposon, putative, centromere-specific
LOC_Os01g31250NANA1+17418308..17419549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31260NANA1+17420345..17423747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31270OsAffx.21980.2.S1_s_at11/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.2.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.1.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.11264.1.S1_at7/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31280OsAffx.11264.1.S1_s_at11/111+17439546..17440105hypothetical protein
LOC_Os01g31280OsAffx.11264.1.S1_at1/111+17439546..17440105hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_x_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31300OsAffx.25367.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_x_at1/111+17447916..17449938retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21980.2.S1_s_at--518--4611Chr01:17433304..17433328 (25 bp)
GCGACGAAATGCATCCACGAGGACT
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--105--2031Chr01:17433282..17433306 (25 bp)
ACTACGCTGTCATCGTTGAGATCGC
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--372--6631Chr01:17433268..17433292 (25 bp)
GTTGAGATCGCGTGCACGAACTCGT
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--344--1851Chr01:17433253..17433277 (25 bp)
ACGAACTCGTCCTCGGAGCTTCTAG
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--1010--8951Chr01:17432943..17432967 (25 bp)
TGACACAGATCACGGCGAACTCATT
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--586--2611Chr01:17432885..17432909 (25 bp)
AACGCCACATTCAGCTGGTTCAGAG
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--833--691Chr01:17432860..17432884 (25 bp)
ATGAGCGCGGCACTAGTATCACCAA
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--1113--2611Chr01:17432706..17432730 (25 bp)
AACCGCGTTAAGGTGCATCTCTGAT
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--847--951Chr01:17432512..17432536 (25 bp)
AGGACAGCCTGACCCGTGTGATCGT
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--899--9111Chr01:17432488..17432512 (25 bp)
TGCTGCACGCGGAGAAGGACCTCAA
LOC_Os01g31270
OsAffx.21980.2.S1_s_at--726--491Chr01:17432411..17432435 (25 bp)
ATCGGCAACGATACATCTGGTGACT
LOC_Os01g31270
Target Sequence 
GCGACGAAATGCATCCACGAGGACTACGCTGTCATCGTTGAGATCGCGTGCACGAACTCGTCCTCGGAGCTTCTAGCGCT
TCTGCTTGCTCTAGTGAGCACCTACAGGTACGACGGGGACGAGGTGAACGATGCATTGGCTAAATCGGAGGCAAAGATTC
TCCATGAGACTGTAACGAATGGTGACACAGATCACGGCGAACTCATTCGGATAGTCGGTACAAGAAGCAGAGCGCAGCTC
AACGCCACATTCAGCTGGTTCAGAGATGAGCGCGGCACTAGTATCACCAAGGCACTGCAGCATGGAGCTGATCCAACAGG
CTACTCGCACGCGCTGCGAACCGCGTTAAGGTGCATCTCTGATGCGAACAAGTACTTCGTGAAGGTGCTAAGGAACGCGA
TGCACAAGTCAGGGACTAACGAGGACAGCCTGACCCGTGTGATCGTGCTGCACGCGGAGAAGGACCTCAAGGGCATCAAG
GACGCGTTCCAGAAGAGGGCCTCGGTTGCCCTGGAGAAAGCCATCGGCAACGATACATCTGGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21980.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis