Browse Element(s) Details


OsAffx.22028.1.S1_at

Description tigr:9635.m01945
TID=OsAffx.22028.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1929011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19240OsAffx.31869.4.S1_x_at8/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19240OsAffx.31869.4.S1_at6/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19240OsAffx.31869.3.S1_x_at5/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19240OsAffx.31869.3.S1_s_at4/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19240OsAffx.31869.5.S1_x_at4/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19240OsAffx.31869.3.S1_at2/117+11396307..11397065retrotransposon protein, putative, unclassified
LOC_Os07g19250NANA7+11397879..11399779retrotransposon protein, putative, unclassified
LOC_Os07g19260OsAffx.28520.1.S1_at11/117+11401287..11402018hypothetical protein
LOC_Os07g19274NANA7+11403510..11408208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19290OsAffx.22028.1.S1_at11/117+11416294..11417842hypothetical protein
LOC_Os07g19300NANA7+11418861..11421764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22028.1.S1_at--595--8371Chr07:11417029..11417053 (25 bp)
GGCGTCAGAGGCTCTGTCTCCGCTC
LOC_Os07g19290
OsAffx.22028.1.S1_at--970--4131Chr07:11417049..11417073 (25 bp)
CGCTCGCGCACCAGGACAAGAGGGA
LOC_Os07g19290
OsAffx.22028.1.S1_at--1120--4471Chr07:11417084..11417108 (25 bp)
GCCGTGCCCGCGAGGGAAAAGCTAA
LOC_Os07g19290
OsAffx.22028.1.S1_at--945--5511Chr07:11417120..11417144 (25 bp)
GAAAAGGAGCCCTGCTCCATACCGA
LOC_Os07g19290
OsAffx.22028.1.S1_at--747--3811Chr07:11417134..11417158 (25 bp)
CTCCATACCGATTTGGGTGAGCAGA
LOC_Os07g19290
OsAffx.22028.1.S1_at--478--5911Chr07:11417174..11417198 (25 bp)
GAGCTCTGGCTCTGTGTTTTGGACG
LOC_Os07g19290
OsAffx.22028.1.S1_at--555--4811Chr07:11417182..11417206 (25 bp)
GCTCTGTGTTTTGGACGCGTGCGCA
LOC_Os07g19290
OsAffx.22028.1.S1_at--613--1611Chr07:11417277..11417301 (25 bp)
AGCTGGCGCGGCAGAAATCAAATGG
LOC_Os07g19290
OsAffx.22028.1.S1_at--538--3411Chr07:11417288..11417312 (25 bp)
CAGAAATCAAATGGCGCGAGCGGGA
LOC_Os07g19290
OsAffx.22028.1.S1_at--152--2011Chr07:11417694..11417718 (25 bp)
ACTCGGATATTGGTGGAATCATGAC
LOC_Os07g19290
OsAffx.22028.1.S1_at--1155--8811Chr07:11417763..11417787 (25 bp)
TGATTTCGAAACTTGTGTTTACACC
LOC_Os07g19290
Target Sequence 
GGCGTCAGAGGCTCTGTCTCCGCTCGCGCACCAGGACAAGAGGGAGAGCAAGACGGCCGTGCCCGCGAGGGAAAAGCTAA
AGAAGGAGGAGGAAAAGGAGCCCTGCTCCATACCGATTTGGGTGAGCAGAGGGAAGAGAGGAGGCGAGCTCTGGCTCTGT
GTTTTGGACGCGTGCGCACTGGGGTGGGGCGACGCGGCAACAGGGCATGGGCGGCGACCGGGCGGCATGGCGCGCGCGCG
CGCGGAGCAGCTGGCGCGGCAGAAATCAAATGGCGCGAGCGGGAGATTTGGCGCCGGAGTGACGAAGGCGGTGGAGGTAA
GGATGGCGGCGACGGGAAACAGGGAGGAGTCAAGGAATGGATTCAAGGTGGACTCGGATATTGGTGGAATCATGACAAGT
ATTTGGCGAGGATTCAAGGAGGCGATTGAATTTCAGGATTTGATTTCGAAACTTGTGTTTACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis