Browse Element(s) Details


OsAffx.22180.1.S1_at

Description gb:NM_188106.1
DB_XREF= gi:34903295
TID=OsAffx.22180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g136901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g262601/11NB-ARC domain containing protein
LOC_Os02g149291/11T-complex protein 1, gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13650OsAffx.20607.1.S1_at11/1110+7173929..7176395hypothetical protein
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13700Os.8805.1.S1_at11/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13700Os.24219.1.A1_at1/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13710OsAffx.30217.1.S1_x_at2/1110+7216381..7217870hypothetical protein
LOC_Os10g13710OsAffx.10222.1.S1_x_at1/1110+7216381..7217870hypothetical protein
LOC_Os10g13730NANA10+7222925..7224950Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22180.1.S1_at--879--8171Chr01:9776073..9776097 (25 bp)
GGAACGGCGGCACTCCCAATTGATG
NONE
OsAffx.22180.1.S1_at--914--3151Chr01:9776090..9776114 (25 bp)
AATTGATGCCGACCGAACACACCGA
NONE
OsAffx.22180.1.S1_at--1033--8391Chr01:9777368..9777392 (25 bp)
GGCCCAGAACCTCCAGGTGTAGAAC
NONE
OsAffx.22180.1.S1_at--1108--7732Chr08:19020293..19020314 (22 bp)
GGTGTAGAACACCAGAACTTCCTAT
NONE
OsAffx.22180.1.S1_at--149--1731Chr01:9777393..9777417 (25 bp)
ACCAGAACTTCCTATCTGCTCAAAA
NONE
OsAffx.22180.1.S1_at--492--3691Chr01:9777404..9777428 (25 bp)
CTATCTGCTCAAAAAGTTCGGAACT
NONE
OsAffx.22180.1.S1_at--257--3491Chr01:9777484..9777508 (25 bp)
CAGGAACTTAGCCAAAATTCACGAG
NONE
OsAffx.22180.1.S1_at--307--5231Chr01:9777474..9777792 (25 bp)
GAATCACAGAAAACACCACACTAGG
NONE
OsAffx.22180.1.S1_at--522--2434Chr01:9777793..9777817 (25 bp)
AAAACCTCTAGGACTTCAGCACAAG
NONE
OsAffx.22180.1.S1_at--257--8132Chr01:9777803..9777827 (25 bp)
GGACTTCAGCACAAGATTCTTTACT
NONE
OsAffx.22180.1.S1_at--43--99751Chr12:15357677..15357697 (21 bp)
TACCTCGTTTCCTTGCGGAGAATGG
NONE
Target Sequence 
GGAACGGCGGCACTCCCAATTGATGCCGACCGAACACACCGATCCACGTACGGCCCAGAACCTCCAGGTGTAGAACACCA
GAACTTCCTATCTGCTCAAAAAGTTCGGAACTTCCGGTGTTCTTATACCGGAACTTCCGGGCAACAGACAAATTCAGGAA
TCACTAACAGGAACTTAGCCAAAATTCACGAGATGAATCACAGAAAACACCACACTAGGAAAACCTCTAGGACTTCAGCA
CAAGATTCTTTACTCACTTACCTCGTTTCCTTGCGGAGAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis