Browse Element(s) Details


OsAffx.22216.1.S1_x_at

Description gb:NM_187933.1
DB_XREF= gi:34902949
GEN=P0462H08.18
TID=OsAffx.22216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0462H08.18 (P0462H08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1545011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22216.1.S1_x_at--972--3291Chr01:8653067..8653091 (25 bp)
CACAAGCATCCAATGACGGCGGCGG
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--719--8451Chr01:8653042..8653066 (25 bp)
TGGCGCCGTCCGCTTTTGTGTCAAC
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--837--10791Chr01:8652998..8653051 (25 bp)
TTGTGTCAACTTCGGACAGGTCGCT
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--1145--2511Chr01:8652991..8653044 (25 bp)
AACTTCGGACAGGTCGCTGCTGGCC
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--943--9331Chr01:8652953..8652977 (25 bp)
TCGCCGAGTTTGACCGCTTCCTCGA
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--348--4011Chr01:8652926..8652950 (25 bp)
CGTACGACTTCAACGCCGTGGGATG
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--1051--10391Chr01:8652864..8652888 (25 bp)
TTCTTGGACAAGAGGAACCCGAACA
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--736--8131Chr01:8652838..8652862 (25 bp)
GGACAAGAACAACCCGAGCGGCCTT
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--975--8451Chr01:8652806..8652830 (25 bp)
TGGCCAGGCGGTTCGTGATGTTCAA
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--332--8871Chr01:8652791..8652815 (25 bp)
TGATGTTCAACGGTGCCGTCTGTGA
LOC_Os01g15450
OsAffx.22216.1.S1_x_at--459--9711Chr01:8652785..8652809 (25 bp)
TCAACGGTGCCGTCTGTGAGGCGCA
LOC_Os01g15450
Target Sequence 
CACAAGCATCCAATGACGGCGGCGGTGGCGCCGTCCGCTTTTGTGTCAACTTCGGACAGGTCGCTGCTGGCCGTCCAGGC
CGTCGTCGCCGAGTTTGACCGCTTCCTCGACGCGTACGACTTCAACGCCGTGGGATGGTCGCGCGACCACCCGATGGCCG
CGGCAGCGGGGAGATTCTTGGACAAGAGGAACCCGAACACGGACAAGAACAACCCGAGCGGCCTTGCCGGCGTGGCCAGG
CGGTTCGTGATGTTCAACGGTGCCGTCTGTGAGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22216.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis