Browse Element(s) Details


OsAffx.22218.1.S1_at

Description gb:NM_187919.1
DB_XREF= gi:34902921
GEN=P0462H08.4
TID=OsAffx.22218.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0462H08.4 (P0462H08.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1533011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15360Os.51348.1.S1_x_at2/111+8600953..8603870retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22218.1.S1_at--464--5611Chr01:8581997..8582021 (25 bp)
GACAATGATGACAATGGCGCCGGTA
LOC_Os01g15330
OsAffx.22218.1.S1_at--11--9111Chr01:8581967..8581991 (25 bp)
TGCTCGCCATTGTTTGGTTCGATTT
LOC_Os01g15330
OsAffx.22218.1.S1_at--981--9111Chr01:8581927..8581951 (25 bp)
TGCGGGCTTTCGTTGTGGGTCTTAC
LOC_Os01g15330
OsAffx.22218.1.S1_at--905--2831Chr01:8581855..8581879 (25 bp)
AAGTACATCCGATTGAAGCGCCACG
LOC_Os01g15330
OsAffx.22218.1.S1_at--335--2671Chr01:8581840..8581864 (25 bp)
AAGCGCCACGCATTGCCAAGGTCGT
LOC_Os01g15330
OsAffx.22218.1.S1_at--114--2891Chr01:8581823..8581847 (25 bp)
AAGGTCGTTCGCACACAAGTTCTGT
LOC_Os01g15330
OsAffx.22218.1.S1_at--482--2191Chr01:8581811..8581835 (25 bp)
ACACAAGTTCTGTCTGCCAGAGGAC
LOC_Os01g15330
OsAffx.22218.1.S1_at--515--8391Chr01:8581777..8581801 (25 bp)
GGCGACATCTCCACACATTGTGAGA
LOC_Os01g15330
OsAffx.22218.1.S1_at--562--1471Chr01:8581755..8581779 (25 bp)
AGAATGGCCTGCTCATGGTCATCGT
LOC_Os01g15330
OsAffx.22218.1.S1_at--753--5371Chr01:8581709..8581733 (25 bp)
GAAGAAGACCACGTCTGCAGCCCTT
LOC_Os01g15330
OsAffx.22218.1.S1_at--599--4171Chr01:8581672..8581696 (25 bp)
CGCCACCTTGGAGGCCTAGACAAAG
LOC_Os01g15330
Target Sequence 
GACAATGATGACAATGGCGCCGGTAGATCCTGCTCGCCATTGTTTGGTTCGATTTTTGCTAAGGTTTGGGTGCGGGCTTT
CGTTGTGGGTCTTACCGGGGGCTAGGGGATTTGTGCACAGCAAGGAGGAGGAAGGCGAGTGCAAGTACATCCGATTGAAG
CGCCACGCATTGCCAAGGTCGTTCGCACACAAGTTCTGTCTGCCAGAGGACTCGGACACCGGCGACATCTCCACACATTG
TGAGAATGGCCTGCTCATGGTCATCGTCAAGAAATGGATGCTGCCTGAGAAGAAGACCACGTCTGCAGCCCTTCTCCCCA
TCGGCCGCCACCTTGGAGGCCTAGACAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis