Browse Element(s) Details


OsAffx.22222.1.S1_x_at

Description tigr:9629.m01507
TID=OsAffx.22222.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1513911/11hypothetical protein
LOC_Os01g1522911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15100NANA1+8468176..8468442hypothetical protein
LOC_Os01g15110Os.15140.1.S1_at11/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15110OsAffx.26720.1.S1_at1/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15120Os.12708.1.S1_at11/111+8483322..8486420hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15130Os.50780.1.S1_at11/111+8487384..8489147hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15139OsAffx.22222.1.S1_x_at11/111+8489757..8490557hypothetical protein
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22222.1.S1_x_at--878--9672Chr01:8524666..8524690 (25 bp)
TCACCGACTTCGTCATCGGTCTCAT
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--414--9612Chr01:8524678..8524702 (25 bp)
TCATCGGTCTCATCAACGCCAACGA
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--404--2612Chr01:8524692..8524716 (25 bp)
AACGCCAACGACTTCGCCGAGGAGC
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--411--5812Chr01:8524725..8524749 (25 bp)
GACGCCTACTGCATGTACTGCTTCA
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--466--9052Chr01:8524734..8524758 (25 bp)
TGCATGTACTGCTTCATGGCCTTCT
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--121--5792Chr01:8524857..8524881 (25 bp)
GACGAGCCGTGGTTCCCTTACATGG
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--156--6712Chr01:8524868..8524892 (25 bp)
GTTCCCTTACATGGAGAGCGTCCTG
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--879--6172Chr01:8524973..8524997 (25 bp)
GAGGAGCTCACCGACCGCGTGCGTA
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--449--6152Chr01:8525010..8525034 (25 bp)
GAGGTGCCCAAACACATGCGCCGCT
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--735--4592Chr01:8525056..8525080 (25 bp)
GCGACGCGGCCCACCAACTGGAGGT
LOC_Os01g15229
OsAffx.22222.1.S1_x_at--397--1712Chr01:8525068..8525092 (25 bp)
ACCAACTGGAGGTCGCCCAGCGCAG
LOC_Os01g15229
Target Sequence 
TCACCGACTTCGTCATCGGTCTCATCAACGCCAACGACTTCGCCGAGGAGCACCCCAGGGACGCCTACTGCATGTACTGC
TTCATGGCCTTCTCCACCGCGCTCTGCCACCACCACCACACCTGCGCCGCCGACTGCGTCCTCCGCATCGTCCGAAGCCA
CGACGGCCGCCACTGCGTCCGCTGCACCGGCGACGAGCCGTGGTTCCCTTACATGGAGAGCGTCCTGGGCGACCCCGTGG
CTGTCGAGGAGGAGGAGGGCGACGACGGCGAGGTGGTGGCTGTGCTGCTGCTGCTGCCCGTGCTGAGGAGGAGCTCACCG
ACCGCGTGCGTACACTGCGGCGGCGAGGTGCCCAAACACATGCGCCGCTCGGTGCTCTGCTCGCCGGCCTGCGACGCGGC
CCACCAACTGGAGGTCGCCCAGCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22222.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis