Browse Element(s) Details


OsAffx.22333.1.S1_at

Description gb:NM_187235.1
DB_XREF= gi:34901555
GEN=P0404G11.25
TID=OsAffx.22333.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0404G11.25 (P0404G11.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g282906/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified
LOC_Os07g28350NANA7+16547938..16548285hypothetical protein
LOC_Os07g28360NANA7+16549629..16553867retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22333.1.S1_at--836--8651Chr07:16524347..16524371 (25 bp)
TGTGGCTAGTGCTGCTCCTTCACTG
NONE
OsAffx.22333.1.S1_at--429--5111Chr07:16524400..16524424 (25 bp)
GCACTCTCCGTCGTGTCAGGAGGAG
NONE
OsAffx.22333.1.S1_at--89--1151Chr07:16524429..16524453 (25 bp)
AGTCAAAGGCAGCACGCGCAATAAG
NONE
OsAffx.22333.1.S1_at--1006--4571Chr07:16524444..16524468 (25 bp)
GCGCAATAAGCTCCCGCTCAAGTTG
NONE
OsAffx.22333.1.S1_at--972--4191Chr07:16524495..16524515 (21 bp)
CCCGTCATTCTTTGTCGGCTGGGAG
NONE
OsAffx.22333.1.S1_at--93--4411Chr07:16524720..16524744 (25 bp)
GCCACTGTTGGCAGCGGGACCAAGA
LOC_Os07g28290
OsAffx.22333.1.S1_at--349--7971Chr07:16526298..16526322 (25 bp)
GGATCTCACTTACAAGACCAGGCTG
LOC_Os07g28290
OsAffx.22333.1.S1_at--545--5851Chr07:16526313..16526337 (25 bp)
GACCAGGCTGACCAATGACGAGACA
LOC_Os07g28290
OsAffx.22333.1.S1_at--1065--3251Chr07:16526336..16526360 (25 bp)
CAACTCAAAAGCCATGGTCCATGGA
LOC_Os07g28290
OsAffx.22333.1.S1_at--638--5551Chr07:16526388..16526412 (25 bp)
GAAACCTTGGTCATCAACCCTGTTG
LOC_Os07g28290
OsAffx.22333.1.S1_at--439--4451Chr07:16526415..16526439 (25 bp)
GCCTTACTTGCACACGCGTGAGGTG
LOC_Os07g28290
Target Sequence 
TGTGGCTAGTGCTGCTCCTTCACTGCCACCCACAGGGCCCCGAGCACCATCGCGCACTCTCCGTCGTGTCAGGAGGAGGG
GAAGTCAAAGGCAGCACGCGCAATAAGCTCCCGCTCAAGTTGCCCTCGTTGCCATCCTTCCAAAGCTCCCCGTCATTCTT
TGTCGGCTGGGAGGGATGGGAGGAGCGTGGCGATGGAGCTGCCATGGCACCGTCGGGGGCCACTGTTGGCAGCGGGACCA
AGAGGATTGAGGTGGAGAACATGGAGGTGTTCAAGGAGACCGTGGAGCTCATNTNNCTGTGTGAGGATCTCACTTACAAG
ACCAGGCTGACCAATGACGAGACAACTCAAAAGCCATGGTCCATGGAGGAGCAAGTGTGGTCGGAGTCGGAGAGGAAACC
TTGGTCATCAACCCTGTTGCCGCCTTACTTGCACACGCGTGAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis