Browse Element(s) Details


OsAffx.22334.1.S1_at

Description gb:NM_187234.1
DB_XREF= gi:34901553
GEN=P0404G11.24
TID=OsAffx.22334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) ubiquitin-related modifier-1 (P0404G11.24), mRNA.
PROD=ubiquitin-related modifier-1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g282804/11expressed protein
LOC_Os01g618201/11ribosomal protein S23 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22334.1.S1_at--164--5211Chr07:16522137..16522161 (25 bp)
GAATTCGGGTGGGTGATTCACTCTC
LOC_Os07g28280
OsAffx.22334.1.S1_at--1008--6351Chr07:16522104..16522128 (25 bp)
GATGCCTTCCATCGTTGTGTTGCTG
LOC_Os07g28280
OsAffx.22334.1.S1_at--590--8812Chr07:16522087..16522111 (25 bp)
TGTTGCTGCTGTGTATTTTGTGGTT
LOC_Os07g28280
OsAffx.22334.1.S1_at--142--8771Chr07:16522076..16522100 (25 bp)
TGTATTTTGTGGTTGCTGATGAGCT
LOC_Os07g28280
OsAffx.22334.1.S1_at--395--7411NONE
GTGATTCAGTAAGGCCTGGTGTTCT
NONE
OsAffx.22334.1.S1_at--748--3591Chr07:16520756..16520976 (25 bp)
CATTACACGGTGATTTGCAGTATAC
NONE
OsAffx.22334.1.S1_at--574--5031Chr07:16520740..16520764 (25 bp)
GCAGTATACTGATCCTGTATTTTCC
NONE
OsAffx.22334.1.S1_at--838--4271Chr07:16520727..16520751 (25 bp)
CCTGTATTTTCCAATGCTGCTGTGC
NONE
OsAffx.22334.1.S1_at--1--3031Chr07:16520715..16520739 (25 bp)
AATGCTGCTGTGCTTTTCTGCATCC
NONE
OsAffx.22334.1.S1_at--1118--10591Chr07:16520700..16520724 (25 bp)
TTCTGCATCCATCACTATCGTAGGC
NONE
OsAffx.22334.1.S1_at--174--371Chr07:16520690..16520714 (25 bp)
ATCACTATCGTAGGCGTTATCTGAA
NONE
Target Sequence 
GAATTCGGGTGGGTGATTCACTCTCTCTCTCTCGATGCCTTCCATCGTTGTGTTGCTGCTGTGTATTTTGTGGTTGCTGA
TGAGCTGTGTGGGTTGATTGATGGTGGTGGTGGTTGCAGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGC
ACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTG
ATCAAGGAGAGGCCGGAGATGTTCCTCAAGGGTGATTCAGTAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTG
GGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGATTTGC
AGTATACTGATCCTGTATTTTCCAATGCTGCTGTGCTTTTCTGCATCCATCACTATCGTAGGCGTTATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis