Browse Element(s) Details


OsAffx.22339.1.S1_at

Description tigr:9635.m02728
TID=OsAffx.22339.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2811011/11Cytochrome P450 51, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28070OsAffx.10110.2.S1_at10/117+16370273..16371024hypothetical protein
LOC_Os07g28080OsAffx.10110.3.S1_s_at11/117+16371189..16372233hypothetical protein
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative
LOC_Os07g28120OsAffx.1403.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28120OsAffx.10108.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22339.1.S1_at--641--411Chr07:16395490..16395514 (25 bp)
ATCAGGTTACGCAGGAACTCCAGCC
LOC_Os07g28110
OsAffx.22339.1.S1_at--291--2591Chr07:16395541..16395565 (25 bp)
AACGATGATATGTTGCAATGCCTCA
LOC_Os07g28110
OsAffx.22339.1.S1_at--254--331Chr07:16395576..16395600 (25 bp)
ATACAAGGACGGGTGCGCCATGACG
LOC_Os07g28110
OsAffx.22339.1.S1_at--150--8191Chr07:16395644..16395668 (25 bp)
GGAAGCACACGAGCTCCGGTGTAAG
LOC_Os07g28110
OsAffx.22339.1.S1_at--944--7431Chr07:16395662..16395686 (25 bp)
GTGTAAGCATCTGGACCGGTGTCCA
LOC_Os07g28110
OsAffx.22339.1.S1_at--549--1011Chr07:16395736..16395760 (25 bp)
AGGTTGATGGCTTCGTGTCCTGGAA
LOC_Os07g28110
OsAffx.22339.1.S1_at--221--4471Chr07:16395779..16395803 (25 bp)
GCCTCGACTACGACACAGTGCAGGA
LOC_Os07g28110
OsAffx.22339.1.S1_at--455--8051Chr07:16395801..16395825 (25 bp)
GGAGATGAGATCTCTGCACTGCTGC
LOC_Os07g28110
OsAffx.22339.1.S1_at--861--8251Chr07:16395858..16395882 (25 bp)
GGCAGCGGTCCGTCAAGCTTACAAG
LOC_Os07g28110
OsAffx.22339.1.S1_at--1080--4891Chr07:16395874..16395898 (25 bp)
GCTTACAAGCACTTCACTGTGCAGA
LOC_Os07g28110
OsAffx.22339.1.S1_at--172--5111Chr07:16395933..16395957 (25 bp)
GCACATGGTGGTTAGCACGATCTTG
LOC_Os07g28110
Target Sequence 
ATCAGGTTACGCAGGAACTCCAGCCGTGGTGCTGCTGGCACTGACGAGAACAACGATGATATGTTGCAATGCCTCATCAA
CTCCAGATACAAGGACGGGTGCGCCATGACGGACGCGGAGATTGCCGGTCTGGTCGTGGCGCTCATGTTCGCGGGGAAGC
ACACGAGCTCCGGTGTAAGCATCTGGACCGGTGTCCACCTGCTCTCTAACCCAAACCACCTCGCTGCCGTCGTCGCTGAG
CAGGATAGGTTGATGGCTTCGTGTCCTGGAAGAACCGATGACTATCATCGCCTCGACTACGACACAGTGCAGGAGATGAG
ATCTCTGCACTGCTGCGTCAAGGAGGCGCTCCGGCTGCACCCGCCGGTGGCAGCGGTCCGTCAAGCTTACAAGCACTTCA
CTGTGCAGACCAAGGAAGATAAAGAGTACACGATCCCAGGAGGGCACATGGTGGTTAGCACGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis