Browse Element(s) Details


OsAffx.22353.1.S1_at

Description tigr:9635.m02607
TID=OsAffx.22353.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein
LOC_Os07g27060OsAffx.28615.1.S1_at11/117+15676840..15677067hypothetical protein
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22353.1.S1_at--82--8391Chr07:15663419..15663443 (25 bp)
GGCGACGCGATGGTGCCACGGCAAT
LOC_Os07g27040
OsAffx.22353.1.S1_at--339--611Chr07:15663450..15663474 (25 bp)
ATGCGCGCCTGAATCTGGCCTAGGG
LOC_Os07g27040
OsAffx.22353.1.S1_at--444--491Chr07:15663462..15663486 (25 bp)
ATCTGGCCTAGGGAGCGGCAACTTT
LOC_Os07g27040
OsAffx.22353.1.S1_at--440--1551Chr07:15663475..15663499 (25 bp)
AGCGGCAACTTTGGGTCGATGGTGC
LOC_Os07g27040
OsAffx.22353.1.S1_at--867--4471Chr07:15663574..15663598 (25 bp)
GCCGGGTTGGACAAGAACGTCCCTG
LOC_Os07g27040
OsAffx.22353.1.S1_at--152--8471Chr07:15663623..15663647 (25 bp)
TGGCCCTGACCCTGCAATGGAGAGC
LOC_Os07g27040
OsAffx.22353.1.S1_at--813--8531Chr07:15663676..15663700 (25 bp)
TGGAGCCCCGTAGGGAGTCGATACT
LOC_Os07g27040
OsAffx.22353.1.S1_at--865--6931Chr07:15663685..15663709 (25 bp)
GTAGGGAGTCGATACTCCAGAAAAA
LOC_Os07g27040
OsAffx.22353.1.S1_at--735--5511Chr07:15663704..15663728 (25 bp)
GAAAAATCAAACTCACATGGCTCAG
LOC_Os07g27040
OsAffx.22353.1.S1_at--1143--9691Chr07:15663710..15663734 (25 bp)
TCAAACTCACATGGCTCAGATCTGT
LOC_Os07g27040
OsAffx.22353.1.S1_at--877--8311Chr07:15663722..15663746 (25 bp)
GGCTCAGATCTGTCCGGCGGCAATG
LOC_Os07g27040
Target Sequence 
GGCGACGCGATGGTGCCACGGCAATGAGGGCATGCGCGCCTGAATCTGGCCTAGGGAGCGGCAACTTTGGGTCGATGGTG
CCTGGCTTGGCAACGGGGCGGGGTGGGGGCCGGGTTGGACAAGAACGTCCCTGCCCCCGACCAACGAACTCTTCCCCTGG
CCCTGACCCTGCAATGGAGAGCGGGGCGTATCTCCCCGCCCCCGAACGTGTGGAGCCCCGTAGGGAGTCGATACTCCAGA
AAAATCAAACTCACATGGCTCAGATCTGTCCGGCGGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis