Browse Element(s) Details


OsAffx.22354.2.S1_s_at

Description tigr:9635.m02606
TID=OsAffx.22354.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2703011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein
LOC_Os07g27060OsAffx.28615.1.S1_at11/117+15676840..15677067hypothetical protein
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22354.2.S1_s_at--12--9751Chr07:15659117..15659141 (25 bp)
TAATCTTGTCTGAGTTCATCTCCCG
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--1031--3291Chr07:15659077..15659101 (25 bp)
CACGATATCCGGCAACTTTAACTAT
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--1117--10191Chr07:15659055..15659079 (25 bp)
TATTTGCCTCACAACTCCATAGTTA
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--1055--3251Chr07:15659044..15659068 (25 bp)
CAACTCCATAGTTAGGGACCACTGC
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--30--811Chr07:15659018..15659042 (25 bp)
ATGGGCTTCTCTTGCTTGATGGCTA
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--135--6231Chr07:15659001..15659025 (25 bp)
GATGGCTATGCGGATTACCCGGCTA
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--392--10471Chr07:15658987..15659011 (25 bp)
TTACCCGGCTACACGACAGTATTAT
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--285--9751Chr07:15658957..15658981 (25 bp)
TAACCCGGCCACACGACAGTGGGTA
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--98--5951Chr07:15658888..15658912 (25 bp)
GAGCACGGAGTACCTTGTCTTTGAC
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--762--1791Chr07:15658865..15658889 (25 bp)
ACCCCGGATTGTCATCACAGTTTGA
LOC_Os07g27030
OsAffx.22354.2.S1_s_at--238--2191Chr07:15658036..15658060 (25 bp)
ACACATTGACCCGTGGACTGGCATA
LOC_Os07g27030
Target Sequence 
TAATCTTGTCTGAGTTCATCTCCCGCCCCTCGATAGGCCCCACGATATCCGGCAACTTTAACTATTTGCCTCACAACTCC
ATAGTTAGGGACCACTGCAATGGGCTTCTCTTGCTTGATGGCTATGCGGATTACCCGGCTACACGACAGTATTATGTGGT
TAACCCGGCCACACGACAGTGGGTACAATTGCCCCCATGCCCAAGTTCGCATCCAGGGATGTACAGTGAGAGCACGGAGT
ACCTTGTCTTTGACCCCGGATTGTCATCACAGTTTGAGAATATCACTGTCTGTGAAGCAATAGAGGAGCAAAAATTTGAG
TGGGACTCTGACAATGATAATGTCATCGATATTAACAATAGGAGTAATTTGACTGGTTATGTAACAATCCTTGGATTCCA
TCCATACAAGGAGGTTGTGTTCTTGAGCCACACATTGACCCGTGGACTGGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22354.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis