Browse Element(s) Details


OsAffx.22354.1.S1_at

Description gb:NM_187154.1
DB_XREF= gi:34901393
GEN=OSJNBb0062P14.28
TID=OsAffx.22354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0062P14.28 (OSJNBb0062P14.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2703010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein
LOC_Os07g27060OsAffx.28615.1.S1_at11/117+15676840..15677067hypothetical protein
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22354.1.S1_at--555--171Chr07:15658625..15658649 (25 bp)
ATTTTCTGCAGAACGCAGTCTACTG
LOC_Os07g27030
OsAffx.22354.1.S1_at--843--1831Chr07:15658613..15658637 (25 bp)
ACGCAGTCTACTGGCGAGGAGTACT
LOC_Os07g27030
OsAffx.22354.1.S1_at--979--8031Chr07:15658436..15658620 (25 bp)
GGAGTACTTTATTCACCTTTGGATA
LOC_Os07g27030
OsAffx.22354.1.S1_at--284--131NONE
ATTCACCTTTGGATATTGGAGATAT
NONE
OsAffx.22354.1.S1_at--331--3291Chr07:15658393..15658417 (25 bp)
CAAATATATATCTGGGACGATCACA
LOC_Os07g27030
OsAffx.22354.1.S1_at--230--9871Chr07:15658353..15658377 (25 bp)
TACATTTGTTGATAATCCATGCGGG
LOC_Os07g27030
OsAffx.22354.1.S1_at--745--7471Chr07:15658293..15658317 (25 bp)
GTGGGTGCTGAAGCATAGAATTTGC
LOC_Os07g27030
OsAffx.22354.1.S1_at--392--10271Chr07:15658273..15658297 (25 bp)
TTTGCTATGTGCCTAGACAGGAATT
LOC_Os07g27030
OsAffx.22354.1.S1_at--278--8211Chr07:15658254..15658278 (25 bp)
GGAATTTCATCAAATTGGACCCTGG
LOC_Os07g27030
OsAffx.22354.1.S1_at--544--4111Chr07:15658245..15658269 (25 bp)
TCAAATTGGACCCTGGACCTTACAA
LOC_Os07g27030
OsAffx.22354.1.S1_at--373--8971Chr07:15658206..15658230 (25 bp)
TGAACATATTGGTCATTCTGAATAT
LOC_Os07g27030
Target Sequence 
ATTTTCTGCAGAACGCAGTCTACTGGCGAGGAGTACTTTATTCACCTTTGGATATTGGAGATATGGATGATTCAAATATA
TATCTGGGACGATCACAGAAGGGGATTTACTGTACATTTGTTGATAATCCATGCGGGGTATATATTCTTGATGAATCATA
TGGCAAAATGGAGTGGGTGCTGAAGCATAGAATTTGCTATGTGCCTAGACAGGAATTTCATCAAATTGGACCCTGGACCT
TACAAGATATCAACTTTTATGAACATATTGGTCATTCTGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis