Browse Element(s) Details


OsAffx.28614.1.S1_at

Description gb:NM_187156.1
DB_XREF= gi:34901397
TID=OsAffx.28614.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0062P14.30 (OSJNBb0062P14.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2705010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein
LOC_Os07g27060OsAffx.28615.1.S1_at11/117+15676840..15677067hypothetical protein
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27080Os.46012.2.S1_x_at8/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.46012.3.S1_x_at6/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.27088.1.A1_x_at5/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.54691.1.S1_x_at1/117+15692648..15698346retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28614.1.S1_at--283--8171Chr07:15670329..15670353 (25 bp)
GGAACACTGTATTGGTGGACTTGGA
LOC_Os07g27050
OsAffx.28614.1.S1_at--606--6871Chr07:15670337..15670361 (25 bp)
GTATTGGTGGACTTGGATCTGATCA
LOC_Os07g27050
OsAffx.28614.1.S1_at--219--8131Chr07:15670345..15670369 (25 bp)
GGACTTGGATCTGATCAATTTGATG
LOC_Os07g27050
OsAffx.28614.1.S1_at--243--6811NONE
GTTTGTAACGGAAGGCACCAGTACA
NONE
OsAffx.28614.1.S1_at--703--5291Chr07:15670729..15670751 (23 bp)
GAAGGCACCAGTACAAGAGTTTGAA
LOC_Os07g27050
OsAffx.28614.1.S1_at--244--4351Chr07:15670734..15670758 (25 bp)
CCAGTACAAGAGTTTGAATTGGCTG
LOC_Os07g27050
OsAffx.28614.1.S1_at--1030--5191Chr07:15670749..15670773 (25 bp)
GAATTGGCTGATCAAATCATTTTTT
LOC_Os07g27050
OsAffx.28614.1.S1_at--849--6071Chr07:15670774..15670798 (25 bp)
GAGTATGACAAGTGTGCTCAATGTG
LOC_Os07g27050
OsAffx.28614.1.S1_at--440--2871Chr07:15670783..15670807 (25 bp)
AAGTGTGCTCAATGTGAATCACAAG
LOC_Os07g27050
OsAffx.28614.1.S1_at--1089--5231Chr07:15670798..15671234 (25 bp)
GAATCACAAGGATCATCAGGTGTTG
LOC_Os07g27050
OsAffx.28614.1.S1_at--249--6631Chr07:15671231..15671255 (25 bp)
GTTGGGCAATATAAATCTACTGCTG
LOC_Os07g27050
Target Sequence 
GGAACACTGTATTGGTGGACTTGGATCTGATCAATTTGATGAAGGCTTTAGGGGAAAAGTTTGTAACGGAAGGCACCAGT
ACAAGAGTTTGAATTGGCTGATCAAATCATTTTTTGAGTATGACAAGTGTGCTCAATGTGAATCACAAGGATCATCAGGT
GTTGGGCAATATAAATCTACTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis