Browse Element(s) Details


OsAffx.22433.3.S1_at

Description tigr:9631.m01027
TID=OsAffx.22433.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g111308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22433.3.S1_at--525--2211Chr03:5709839..5709863 (25 bp)
ACAAGCACGAGAAGGTGGTTGTGGT
LOC_Os03g11130
OsAffx.22433.3.S1_at--1013--3331Chr03:5710675..5710699 (25 bp)
CACGGGAATCGGAAGTTTTCACTCT
LOC_Os03g11130
OsAffx.22433.3.S1_at--649--6811Chr03:5710689..5710713 (25 bp)
GTTTTCACTCTCCTTCGAATGTGAG
LOC_Os03g11130
OsAffx.22433.3.S1_at--941--10511Chr03:5710692..5710716 (25 bp)
TTCACTCTCCTTCGAATGTGAGACA
LOC_Os03g11130
OsAffx.22433.3.S1_at--737--9511Chr03:5710767..5710791 (25 bp)
TCTAAAAGGATTGGATGCAGTCGGT
LOC_Os03g11130
OsAffx.22433.3.S1_at--261--2911Chr03:5710772..5710855 (25 bp)
AAGGATTGGATGCAGTCGGTTATCA
LOC_Os03g11130
OsAffx.22433.3.S1_at--1129--6591NONE
GATTGGATGCAGTCGGTTATCACCT
NONE
OsAffx.22433.3.S1_at--499--31NONE
ATTGGATGCAGTCGGTTATCACCTT
NONE
OsAffx.22433.3.S1_at--46--7991NONE
GGATGCAGTCGGTTATCACCTTAGT
NONE
OsAffx.22433.3.S1_at--449--1671Chr03:5712528..5712552 (25 bp)
AGCCACTAAGATATACGTTGGTATC
LOC_Os03g11130
OsAffx.22433.3.S1_at--939--3731Chr03:5712533..5712557 (25 bp)
CTAAGATATACGTTGGTATCTCGAC
LOC_Os03g11130
Target Sequence 
ACAAGCACGAGAAGGTGGTTGTGGTGGAATGCAGGGGCCATGATGCTGCTCGGTTGCAAAACATTGACCATTTGCATGGT
TGGGAAGATGACATTGTTGGTTTGGTTGAAAAGAAACACGGGAATCGGAAGTTTTCACTCTCCTTCGAATGTGAGACACT
GAAGGCTGACAAAGCTGCAGAAGAGCACATTAGCAAGTATATGCCAAATCTAAAAGGATTGGATGCAGTCGGTTATCACC
TTAGTTACCCGGTGGCTACGTACCTGGGCTATCCTCCACCAACCGGGACTGCGGGATACTATTATGGTGGTATCTCGACG
TTTGGACCAGGTGGCACAGGAGTTTTTTTACCCAGGAGCATGGGTGGCAGTCTAGTCTACAGATTGATAGCCACTAAGAT
ATACGTTGGTATCTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22433.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis