Browse Element(s) Details


OsAffx.22523.1.S1_at

Description gb:NM_186102.1
DB_XREF= gi:34899289
TID=OsAffx.22523.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0450A04.38), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4722011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22523.1.S1_at--763--11Chr07:28224140..28224164 (25 bp)
ATAGGACGACAACTGGGTCCGCCAT
LOC_Os07g47220
OsAffx.22523.1.S1_at--691--4211Chr07:28224158..28224182 (25 bp)
CCGCCATCAGTGTACCGGAGATCAA
LOC_Os07g47220
OsAffx.22523.1.S1_at--544--6451Chr07:28224177..28224201 (25 bp)
GATCAATCAGAGGAACTTCGCCGGT
LOC_Os07g47220
OsAffx.22523.1.S1_at--1119--3631Chr07:28224192..28224216 (25 bp)
CTTCGCCGGTGGGTCCGCGATGAAA
LOC_Os07g47220
OsAffx.22523.1.S1_at--259--11Chr07:28224301..28224325 (25 bp)
ATATCCCCACCGCAGTCGAATCGAG
LOC_Os07g47220
OsAffx.22523.1.S1_at--825--7211Chr07:28224315..28224339 (25 bp)
GTCGAATCGAGTTATCGCCGGTCAA
LOC_Os07g47220
OsAffx.22523.1.S1_at--533--6071Chr07:28224323..28224347 (25 bp)
GAGTTATCGCCGGTCAACCACTCGT
LOC_Os07g47220
OsAffx.22523.1.S1_at--650--9391Chr07:28224344..28224368 (25 bp)
TCGTCGGATCCCTACCTGTAACCAT
LOC_Os07g47220
OsAffx.22523.1.S1_at--178--9971Chr07:28224356..28224380 (25 bp)
TACCTGTAACCATCGTTGTCGTGCT
LOC_Os07g47220
OsAffx.22523.1.S1_at--1065--1831Chr07:28224384..28224408 (25 bp)
ACGCACCAGCATCACAACGATGGTT
LOC_Os07g47220
OsAffx.22523.1.S1_at--97--831Chr07:28224403..28224427 (25 bp)
ATGGTTGAATCATCCTCCTTTGCTC
LOC_Os07g47220
Target Sequence 
ATAGGACGACAACTGGGTCCGCCATCAGTGTACCGGAGATCAATCAGAGGAACTTCGCCGGTGGGTCCGCGATGAAAGAG
GATGATGATGAGGACATCGGCGGCTTGGAGGACGGCGTCAGTGATGAGGACGGGCGCCACTGCGCCCAATCTCTCACCTC
CATATCCCCACCGCAGTCGAATCGAGTTATCGCCGGTCAACCACTCGTCGGATCCCTACCTGTAACCATCGTTGTCGTGC
TCCCACGCACCAGCATCACAACGATGGTTGAATCATCCTCCTTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis