Browse Element(s) Details


OsAffx.22589.1.S1_at

Description tigr:9635.m04946
TID=OsAffx.22589.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4894011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22589.1.S1_at--798--5351Chr07:29278980..29279004 (25 bp)
GAAGAACAACCGTGCAGGCCTGGTT
LOC_Os07g48940
OsAffx.22589.1.S1_at--115--1011Chr07:29278948..29278972 (25 bp)
AGGATCACTTCCAGATGCTGCTCTT
LOC_Os07g48940
OsAffx.22589.1.S1_at--487--10571Chr07:29278925..29278949 (25 bp)
TTCTCCTCGAGACACGACGGATGGG
LOC_Os07g48940
OsAffx.22589.1.S1_at--342--6211Chr07:29278851..29278912 (25 bp)
GAGGCGACAAGTACATTTCCCGGAG
LOC_Os07g48940
OsAffx.22589.1.S1_at--1047--5731Chr07:29278799..29278823 (25 bp)
GACGGCATATGCTTGTCTGCGGCGC
LOC_Os07g48940
OsAffx.22589.1.S1_at--201--4971Chr07:29278759..29278783 (25 bp)
GCATCGCGTTCTCCGTCGAGAAAGA
LOC_Os07g48940
OsAffx.22589.1.S1_at--237--9871Chr07:29278625..29278649 (25 bp)
TACTGCAACCCGGTGTTCTACGACG
LOC_Os07g48940
OsAffx.22589.1.S1_at--744--891Chr07:29278516..29278540 (25 bp)
AGGCGCCTGTACTTGTGGATGGCAA
LOC_Os07g48940
OsAffx.22589.1.S1_at--743--6371Chr07:29278478..29278502 (25 bp)
GATCCGATTCCAGGTGACATGTACT
LOC_Os07g48940
OsAffx.22589.1.S1_at--392--751Chr07:29278460..29278484 (25 bp)
ATGTACTGCCATCTGCTGGAGTTCA
LOC_Os07g48940
OsAffx.22589.1.S1_at--466--6071Chr07:29278442..29278466 (25 bp)
GAGTTCATGGGTTTTCAGGCCGCAC
LOC_Os07g48940
Target Sequence 
GAAGAACAACCGTGCAGGCCTGGTTCAGTCCCAGGATCACTTCCAGATGCTGCTCTTCTCCTCGAGACACGACGGATGGG
TGCTTGCGACGAGAGGCGACAAGTACATTTCCCGGAGGCGACGTTCCCCGTCGACAACCAGTTCGACGGCATATGCTTGT
CTGCGGCGCCGACGTCTCCTGACTGCATCGCGTTCTCCGTCGAGAAAGACCGGAATCCGACGGGGCGAAACCGCAGCGTC
TACGTCACGCTGTGGCGCGCGGGAGACGAGCAGTGGACGATGCAGCGAATCGACGATCACACCCCGTTCCGGACGGCGTA
CTGCAACCCGGTGTTCTACGACGGCGAGTTCTACTGCTTGGGGACCCGTGGTGGCCTCGCCGTCTTCAACCCCAACAACA
CGACATGGAGAGTTCTTGACAAGCCGGAGGCGCCTGTACTTGTGGATGGCAATAATTTTGGTGATGATCCGATTCCAGGT
GACATGTACTGCCATCTGCTGGAGTTCATGGGTTTTCAGGCCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis