Browse Element(s) Details


OsAffx.22603.1.S1_at

Description tigr:9634.m00129
TID=OsAffx.22603.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0229011/11hypothetical protein
LOC_Os08g258803/11retrotransposon protein, putative, unclassified
LOC_Os12g201901/11retrotransposon protein, putative, unclassified
LOC_Os01g357201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g267041/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02270Os.31468.2.S1_at3/116+749409..749846hypothetical protein
LOC_Os06g02280NANA6+753704..754111hypothetical protein
LOC_Os06g02290OsAffx.22603.1.S1_at11/116+755270..755926hypothetical protein
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22603.1.S1_at--70--5332Chr08:15630850..15630874 (25 bp)
GAAGTGGACCCAACCAATATTGTTC
LOC_Os08g25880
OsAffx.22603.1.S1_at--585--6573Chr08:15630955..15630979 (25 bp)
GATTCTTTTCAGGAGACCCGCAGAG
LOC_Os08g25880
OsAffx.22603.1.S1_at--766--5814Chr08:15630969..15630993 (25 bp)
GACCCGCAGAGGAACCATCGTACAA
LOC_Os08g25880
OsAffx.22603.1.S1_at--971--7011Chr06:755675..755699 (25 bp)
GTACAAGTTGAAGGTGGTCGCAGCC
LOC_Os06g02290
OsAffx.22603.1.S1_at--175--7231Chr06:755659..755683 (25 bp)
GTCGCAGCCGATGAGGTCAGCCCAA
LOC_Os06g02290
OsAffx.22603.1.S1_at--456--7111Chr06:755644..755668 (25 bp)
GTCAGCCCAAGTTCATCTCAGGGTG
LOC_Os06g02290
OsAffx.22603.1.S1_at--1076--2891Chr06:755616..755640 (25 bp)
AAGGTACTGCAACTGGCTCAGGTAA
LOC_Os06g02290
OsAffx.22603.1.S1_at--135--2651Chr06:755539..755563 (25 bp)
AACCAAGAGCCACTGCAATTCAATA
LOC_Os06g02290
OsAffx.22603.1.S1_at--605--4511Chr06:755404..755428 (25 bp)
GCCGAACATCAAGCTTCAGGACCAG
LOC_Os06g02290
OsAffx.22603.1.S1_at--71--5131Chr06:755332..755356 (25 bp)
GCAAATCAGTCGAATGTCTCCCATG
LOC_Os06g02290
OsAffx.22603.1.S1_at--648--8311Chr06:755300..755324 (25 bp)
GGCTCAGCCGATGGCTTCAGCTTCA
LOC_Os06g02290
Target Sequence 
GAAGTGGACCCAACCAATATTGTTCCAATCACATTGGATAGGCTGACAGCTGAGCAAAGGGATGAACTTGAACAGATGAT
GAGCAACGTGAAGAACAAATTCATGGATTCTTTTCAGGAGACCCGCAGAGGAACCATCGTACAAAAGTACAAGTTGAAGG
TGGTCGCAGCCGATGAGGTCAGCCCAAGTTCATCTCAGGGTGACAAAGGTACTGCAACTGGCTCAGGTAACAAAAGTGAT
ATTCCTCAAGATGGTACAGTTGAAGACCTTGGTGCAGATGGCAACCAAGAGCCACTGCAATTCAATAATTTTCAAGATAG
GATCGACTATGCCGTGCAACATGCCTTGATCAATCAGTCTGGAGTATTAGTTAATACCTTAACCAATATGGTAAAGACTG
TTGTCGATGGTTCGATAGCCGAACATCAAGCTTCAGGACCAGTCTATTTACCAGGAGGTGTTTTTCCAAATTATAGACCA
TTGGTCACAGCAAATCAGTCGAATGTCTCCCATGCATTACCGGCTCAGCCGATGGCTTCAGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis