Browse Element(s) Details


OsAffx.2262.1.S1_x_at

Description tigr:9629.m04497
TID=OsAffx.2262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin-conjugating enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g469269/11Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g469201/11hypothetical protein
LOC_Os01g701401/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2262.1.S1_x_at--289--1411Chr01:27109341..27109365 (25 bp)
AGACATGTTCCACTGGCAGGCAACG
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--449--7711Chr01:27109311..27109335 (25 bp)
GGGTCCATCTGATAGCCCATATGCT
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--476--8031Chr01:27109283..27109307 (25 bp)
GGAGTTTTCCTAGTTACCATCCACT
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--511--8371Chr01:27108498..27108522 (25 bp)
TGGCGTTTCGCACCAAGGTTTTCCA
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--604--5151Chr01:27108459..27108483 (25 bp)
GCAACGGGAGCATTTGCCTTGACAT
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--881--9772Chr01:27108431..27108455 (25 bp)
TAAGGACCAATGGAGCCCAGCACTA
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--878--2891Chr01:27108288..27108311 (24 bp)
AAGGTGTTGCTGTCAATCTGTTCCC
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--767--4752Chr01:27108262..27108286 (25 bp)
GCTGACTGATCCGAACCCTGATGAT
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--403--3871Chr01:27108245..27108269 (25 bp)
CTGATGATCCTCTGGTCCCTGAGAT
LOC_Os01g46926
OsAffx.2262.1.S1_x_at--236--3751Chr01:27104293..27104312 (20 bp)
CTCAGAGCTCTTCCTACATGTATAT
NONE
OsAffx.2262.1.S1_x_at--447--2051Chr01:27104235..27104259 (25 bp)
ACTTCATATTCGTAGTGGCGGCGAT
NONE
Target Sequence 
AGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCC
ACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAAC
GGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTC
CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACG
AGAACACAGCAAGGACCTGGACTCAGAGCTCTTCCTACATGTATATATTCACGTATGGTTACAACAAGCTACGATCATCA
CTTCATATTCGTAGTGGCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2262.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis