Browse Element(s) Details


OsAffx.22641.1.S1_at

Description gb:NM_185182.1
DB_XREF= gi:34897449
GEN=OSJNBb0096M04.55
TID=OsAffx.22641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retrotransposon protein (OSJNBb0096M04.55), mRNA.
PROD=putative retrotransposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6323011/11retrotransposon protein, putative, LINE subclass
LOC_Os12g380208/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22641.1.S1_at--145--8112Chr03:35667495..35667519 (25 bp)
GGACCCTTGTTGACTTCAGACTGAG
LOC_Os03g63230
OsAffx.22641.1.S1_at--934--471Chr03:35667544..35667568 (25 bp)
ATCTGCATCTGAATTCTGTGTGGGC
LOC_Os03g63230
OsAffx.22641.1.S1_at--634--4351Chr03:35667636..35667660 (25 bp)
CCACCCTTGCGACTTTTATTGGTAG
LOC_Os03g63230
OsAffx.22641.1.S1_at--431--6532Chr03:35667710..35667734 (25 bp)
GATTTGCAAGGATCTCTCTCGGATA
LOC_Os03g63230
OsAffx.22641.1.S1_at--749--8492Chr03:35667812..35667836 (25 bp)
TGGAAGCTCACTCCGGATGGTTCTT
LOC_Os03g63230
OsAffx.22641.1.S1_at--402--6252Chr03:35667827..35667851 (25 bp)
GATGGTTCTTTCTCAGTGTCCTCAG
LOC_Os03g63230
OsAffx.22641.1.S1_at--517--1112Chr03:35667841..35667865 (25 bp)
AGTGTCCTCAGCTTATGATCTCTTT
LOC_Os03g63230
OsAffx.22641.1.S1_at--1117--10531Chr03:35667866..35667890 (25 bp)
TTCATGGCTCGTGAGATTTCTCCTT
LOC_Os03g63230
OsAffx.22641.1.S1_at--155--1272Chr03:35667879..35667903 (25 bp)
AGATTTCTCCTTGCGGACAGCTAAT
LOC_Os03g63230
OsAffx.22641.1.S1_at--968--5052Chr03:35668090..35668114 (25 bp)
GCAGCTGCTGCGAGCATGGGTCAAT
LOC_Os03g63230
OsAffx.22641.1.S1_at--219--7832Chr03:35668108..35668132 (25 bp)
GGTCAATGTGGATTTCCCTCTGCCA
LOC_Os03g63230
Target Sequence 
GGACCCTTGTTGACTTCAGACTGAGCGCAGATGACGAGAAAATCTTCCAATCTGCATCTGAATTCTGTGTGGGCAATGGT
AGAGACACTAAATTTTGGTCGGACAATTGGCTAGGTGGAGGAAGCATTGCCTGGAGATGGCCCACCCTTGCGACTTTTAT
TGGTAGAACTAAGCTCACAGTAGAACAGGGACTCCTGGGACATCGATGGGTGAGAGATTTGCAAGGATCTCTCTCGGATA
TAGCAATGATGCAGTATTTTCAGCTTTGGGACGAAATCCAACAAATCAATCTCAGTCAGGAGGAGGACACAATTCGCTGG
AAGCTCACTCCGGATGGTTCTTTCTCAGTGTCCTCAGCTTATGATCTCTTTTTCATGGCTCGTGAGATTTCTCCTTGCGG
ACAGCTAATTTGGCAGACAAAAGCTCCGTCGAAGGCGAGTATGGCAGCTGCTGCGAGCATGGGTCAATGTGGATTTCCCT
CTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis