Browse Element(s) Details


OsAffx.22686.1.S1_at

Description gb:NM_184825.1
DB_XREF= gi:34896739
GEN=OSJNBb0042N11.17
TID=OsAffx.22686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBb0042N11.17), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3978011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22686.1.S1_at--74--4351Chr03:22089360..22089384 (25 bp)
CCACCAGGATACATTGTTACAGGAC
LOC_Os03g39780
OsAffx.22686.1.S1_at--322--10091Chr03:22089408..22089432 (25 bp)
TAGGTCCACGCGCAATAGAGAAAAT
LOC_Os03g39780
OsAffx.22686.1.S1_at--448--2251Chr03:22089429..22089453 (25 bp)
AAATATGCACAATATGCGCCTTAGG
LOC_Os03g39780
OsAffx.22686.1.S1_at--764--10111Chr03:22089441..22089465 (25 bp)
TATGCGCCTTAGGTCCACCAGCAAA
LOC_Os03g39780
OsAffx.22686.1.S1_at--757--3291Chr03:22089459..22089483 (25 bp)
CAGCAAACTCCTCGGCTTTCTAATC
LOC_Os03g39780
OsAffx.22686.1.S1_at--893--3671Chr03:22089474..22089498 (25 bp)
CTTTCTAATCTCCTCCCGAGGCATA
LOC_Os03g39780
OsAffx.22686.1.S1_at--775--6171Chr03:22089491..22089515 (25 bp)
GAGGCATAGAAGCTAACCCCAAGAA
LOC_Os03g39780
OsAffx.22686.1.S1_at--80--4831Chr03:22089502..22089526 (25 bp)
GCTAACCCCAAGAAAATACGCGCAA
LOC_Os03g39780
OsAffx.22686.1.S1_at--425--2611Chr03:22089650..22089674 (25 bp)
AACGCCCTGGGCCATTTGTATGGAT
LOC_Os03g39780
OsAffx.22686.1.S1_at--113--4551Chr03:22089653..22089677 (25 bp)
GCCCTGGGCCATTTGTATGGATGAA
LOC_Os03g39780
OsAffx.22686.1.S1_at--557--8811Chr03:22089674..22089698 (25 bp)
TGAAGGAAGCGGAGTTGCCTAACCC
LOC_Os03g39780
Target Sequence 
CCACCAGGATACATTGTTACAGGACTTGGCCGAGACTTTCGACAGCCTTAGGTCCACGCGCAATAGAGAAAATATGCACA
ATATGCGCCTTAGGTCCACCAGCAAACTCCTCGGCTTTCTAATCTCCTCCCGAGGCATAGAAGCTAACCCCAAGAAAATA
CGCGCAATAGAGAGGATGCGCCCCCCCAGCAAGCTTAGGGATGTGCAGTGCGTCACGGGATGCATGGCCGCCCTAAGTCG
ATTCATATCGAGGCTGGGAGAGAGGGCGCTGCCCCTATTCAAGCTCCTCAAACGCCCTGGGCCATTTGTATGGATGAAGG
AAGCGGAGTTGCCTAACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis