Browse Element(s) Details


OsAffx.22711.1.S1_x_at

Description gb:NM_189836.1
DB_XREF= gi:34906755
GEN=P0552F09.32
TID=OsAffx.22711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 4 OSJNBb0080H08.22 (P0552F09.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4269011/11retrotransposon protein, putative, unclassified
LOC_Os03g613902/11retrotransposon protein, putative, unclassified
LOC_Os03g368901/11retrotransposon protein, putative, unclassified
LOC_Os01g340301/11retrotransposon protein, putative, unclassified
LOC_Os05g297801/11retrotransposon protein, putative, unclassified
LOC_Os09g186101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22711.1.S1_x_at--747--4412Chr03:34781604..34781628 (25 bp)
GCCAGCTCGCCATGGCTCAGAGTAC
LOC_Os03g61390
OsAffx.22711.1.S1_x_at--670--9331Chr07:25556884..25556908 (25 bp)
TCGCCGACCTGGAACGCCTGGTGCA
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--640--4971Chr07:25556755..25556779 (25 bp)
GCATCTCCGTGCGTCGGGACAGCAA
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--248--7195Chr09:11405584..11405603 (20 bp)
GTCGGCGAGACCATAAAGTCTTCGT
LOC_Os09g18610
OsAffx.22711.1.S1_x_at--855--2291Chr07:25556640..25556664 (25 bp)
AAAGTCTTCGTCAGTTTCCTTGGCA
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--326--7111Chr07:25556631..25556655 (25 bp)
GTCAGTTTCCTTGGCACGGGCTGCG
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--702--5811Chr07:25556573..25556597 (25 bp)
GACCCCGAATTCATGCCGTGGCGTG
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--283--3151Chr07:25556566..25556590 (25 bp)
AATTCATGCCGTGGCGTGCGCTCGA
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--939--4691Chr07:25556492..25556516 (25 bp)
GCGGCTGACGCGATTGTCTTGAGTT
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--944--5791Chr07:25556486..25556510 (25 bp)
GACGCGATTGTCTTGAGTTTCGAGG
LOC_Os07g42690
OsAffx.22711.1.S1_x_at--221--5792Chr07:25556390..25556414 (25 bp)
GACGACTGGGACGACATCGTCAGTG
LOC_Os07g42690
Target Sequence 
GCCAGCTCGCCATGGCTCAGAGTACCCTCGCCGACCTGGAACGCCTGGTGCAGGATCAGGCTGGGGAAATTGCGGCCCTC
CGCCTCACCAACGAGCTCGGGCCCGGGCAACTCTCCGACGCCGTCGACCGGCTGGAGCGCGCGGGGCGCCGAGTCGGCAT
CTCCGTGCGTCGGGACAGCAAACTCCCGCCCACACAGCTAGCACTCGCGCTTCGGCTGGACGGGCTGGCGGTGGACCTGG
AGAGGCTAGAGGAGGAGGTCGGCGAGACCATAAAGTCTTCGTCAGTTTCCTTGGCACGGGCTGCGGTGGAGCTGGTCCTC
GCGAGCCACCAAGCGCGCGACCCCGAATTCATGCCGTGGCGTGCGCTCGAAGATTTTCCCCCGGGTACCGAGGCAAGGGC
CCGGGAGCAAGTCCGGGAGGCGGCTGACGCGATTGTCTTGAGTTTCGAGGGGGCGGCCCCCCGGTTCACCTCTGGGCTTA
CCTCGGACGAGGAAAACGGAAGCGGGGATGACAACGGCGACGACGACTGGGACGACATCGTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis